Detailed information    

insolico Bioinformatically predicted

Overview


Name   rexA   Type   Machinery gene
Locus tag   V6U64_RS01670 Genome accession   NZ_CP145862
Coordinates   310968..314621 (+) Length   1217 a.a.
NCBI ID   WP_410536793.1    Uniprot ID   -
Organism   Streptococcus salivarius strain KSS4     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context


Location: 305968..319621
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  V6U64_RS01660 (V6U64_01660) - 306036..307409 (+) 1374 WP_410536789.1 GHKL domain-containing protein -
  V6U64_RS01665 (V6U64_01665) rexB 307658..310978 (+) 3321 WP_410536791.1 ATP-dependent nuclease subunit B Machinery gene
  V6U64_RS01670 (V6U64_01670) rexA 310968..314621 (+) 3654 WP_410536793.1 helicase-exonuclease AddAB subunit AddA Machinery gene
  V6U64_RS01675 (V6U64_01675) - 314976..315707 (-) 732 WP_410536795.1 DUF554 domain-containing protein -
  V6U64_RS01680 (V6U64_01680) - 315981..316712 (+) 732 WP_183137331.1 ABC transporter ATP-binding protein -
  V6U64_RS01685 (V6U64_01685) - 316715..318304 (+) 1590 WP_410536797.1 ABC transporter permease -
  V6U64_RS01690 (V6U64_01690) proB 318424..319227 (+) 804 WP_410536799.1 glutamate 5-kinase -

Sequence


Protein


Download         Length: 1217 a.a.        Molecular weight: 138031.98 Da        Isoelectric Point: 4.6703

>NTDB_id=853359 V6U64_RS01670 WP_410536793.1 310968..314621(+) (rexA) [Streptococcus salivarius strain KSS4]
MLTKAFLSPTEIKERIAQEAASDKERKLTPEQIEAIYSNGTNILVSASAGSGKTFVMVERILDMIGRGVGIDQLFISTFT
VKAAGELKERLEKRLTEQLGQVETDEERAFLSDQIAKIGTADIGTMDAFTQKLVNQYGYLLGVSPIFRIMTDPAEQTLMK
NEVYADLFNDYMQGKDAQLFQKLVRNFAGNGKTSKAFRDLVYDVYNFSQATAGPEKWLRQNLLKGQAEANPDKAKAELLE
GLKDGLLADFLDFLRDHLGLAQREFAKAKYLNNVSDAISLLEGALANDQTDMEDLLKQLLTLSGGTGLTNMTRPKDEELK
AYKEAYNKTKNEFVAQLREVDTQLTVLEVLTKHNDDILPLLELLQAFVLDFSDQYLQAKIQENAFEFSDIAHFAIRILEE
NPEVAASYRDRYHEVMVDEYQDNSHTQERMLELLSNGHNRFMVGDIKQSIYRFRQADPQIFNGKFQLFLENPDAGKLILL
KENFRSQSEVLDATNGVFSHLMDQEIGDILYDKTHMLVAGSDKQKEPHPENETEVLIYNSDEASETPDEEGADQPISSGE
ISLVIKEIINLHEQGVRFEDITLLAPTRNTYLDLMASFEEHGIPLVPDEYKSSYLESLEVMIMLDTLRAINNPLNDYALV
ALLRSPMFNFNEDDLARIAVQADKGQFYDKLLAAHTKSGLHPEVVTQGLEAKLTLFIETLSDWRDYSKWHSLYDLIWKIY
DDRFYYDYVGSLPRAEQRQANLYALALRANAYEKTGFKGLSRFIGMIDKIISSGNDLEEVTDLVPKNAVSLMTIHKSKGL
EFKYVFVLQMNRKFIGHSKDGLSGKYIINREKGIGIKYLADLKDQINTNLPKLNVVLETLTFQENQLEERRASISEEMRL
LYVAMTRAEKKLYLVGKGSKEKLTQQFGTDVENDRLPVSLRDKLSTYQDWVMALDTAFMRKDLQFTIRFVEAEELTPEAI
GQVEVQAAVNADDLSNNRQTEDIKRALTVLESVEKLNQLYAPAIDLPSVRTPSQLKSFYEPVMDTEGVDIMDKKEEVQPL
ETTTSFELPDFGQKTKVTGAAVGSATHELMQRLILSGKVTLQDLTQALSRVSADDQVKARVQLEKLLGFFDTDLGKLILA
NRDKLRREAPFAMLAEDPASKEDFVVRGIIDGYLLLEDRIVLFDYKTDRFTQPGELKERYKGQMSLYAKALSQAYQVDKI
DKYLILLGGKNLEVVEV

Nucleotide


Download         Length: 3654 bp        

>NTDB_id=853359 V6U64_RS01670 WP_410536793.1 310968..314621(+) (rexA) [Streptococcus salivarius strain KSS4]
ATGTTGACTAAAGCTTTTTTAAGTCCAACAGAGATTAAGGAACGCATTGCCCAAGAAGCAGCTTCTGACAAGGAACGCAA
GTTAACACCTGAGCAGATTGAGGCCATTTACAGTAATGGGACTAATATTCTTGTGTCAGCTTCGGCGGGATCAGGAAAAA
CCTTTGTCATGGTTGAGCGTATCCTTGATATGATTGGACGTGGTGTTGGCATTGACCAACTCTTTATCTCAACCTTTACG
GTAAAGGCCGCAGGTGAGTTAAAAGAGCGTCTGGAAAAACGTCTGACAGAGCAGCTGGGACAGGTAGAGACAGATGAAGA
GCGTGCCTTTCTTTCAGATCAGATTGCCAAGATTGGAACGGCTGATATTGGAACTATGGATGCCTTTACCCAGAAATTGG
TCAATCAGTATGGCTATCTCCTGGGGGTGTCACCTATTTTCCGCATTATGACAGATCCTGCCGAGCAGACACTTATGAAA
AATGAGGTTTATGCCGATCTTTTCAACGATTACATGCAAGGAAAGGATGCCCAACTTTTCCAAAAATTGGTCCGCAACTT
CGCAGGAAATGGCAAGACTAGTAAGGCTTTTCGTGATTTAGTTTACGATGTCTATAACTTTTCTCAGGCTACTGCAGGTC
CTGAAAAATGGCTACGTCAAAATCTTTTAAAAGGGCAGGCAGAGGCCAATCCAGACAAGGCTAAAGCTGAGCTTTTAGAG
GGTCTCAAAGATGGCTTGTTGGCTGATTTCTTAGACTTCTTAAGAGACCATCTAGGTCTAGCTCAGCGTGAATTTGCCAA
GGCCAAATATCTAAATAATGTGTCAGATGCCATTAGCCTTCTTGAGGGAGCCTTGGCCAATGACCAAACGGATATGGAGG
ACTTGCTCAAACAACTCTTGACTTTGTCAGGAGGGACTGGTTTGACCAATATGACCCGTCCTAAAGACGAGGAACTCAAG
GCCTACAAGGAAGCTTACAACAAGACCAAAAATGAGTTTGTGGCCCAGTTGCGAGAGGTTGATACCCAGCTAACGGTCCT
CGAGGTTTTGACCAAGCATAATGATGACATCCTACCTCTGTTGGAGTTGCTTCAGGCCTTTGTACTTGATTTTTCGGACC
AGTATTTACAGGCCAAGATTCAGGAAAATGCCTTTGAATTCTCGGATATTGCCCATTTTGCCATCCGTATTTTGGAGGAA
AATCCAGAGGTGGCAGCTAGCTACCGTGACCGTTACCATGAAGTAATGGTAGACGAGTATCAGGACAATAGCCATACCCA
AGAACGCATGTTGGAGCTCCTCTCTAATGGCCACAACCGATTCATGGTGGGAGATATCAAACAATCCATCTATCGTTTCC
GTCAGGCAGACCCTCAGATTTTTAATGGCAAGTTCCAGCTCTTCCTTGAAAATCCAGATGCAGGTAAGCTGATTCTCCTT
AAAGAGAACTTCCGTAGTCAATCTGAGGTTCTTGATGCGACCAATGGTGTTTTCAGTCACCTCATGGATCAGGAAATCGG
AGACATCCTCTATGACAAGACTCACATGCTGGTAGCGGGTAGCGATAAGCAAAAAGAACCCCATCCTGAAAATGAGACAG
AGGTTCTGATTTACAATAGTGATGAAGCGAGTGAAACTCCTGACGAAGAAGGTGCTGATCAACCTATTAGTAGCGGCGAG
ATTTCCTTGGTTATCAAAGAAATCATCAACCTTCATGAGCAGGGTGTACGTTTTGAGGATATTACCCTCCTAGCACCAAC
CCGTAACACCTATCTGGACTTGATGGCAAGCTTTGAGGAGCACGGAATTCCCTTGGTTCCTGACGAGTACAAGTCAAGCT
ACCTAGAGTCACTAGAAGTTATGATTATGTTGGATACCCTTCGTGCCATCAATAATCCTCTCAACGACTACGCCTTGGTT
GCCCTCCTTCGTTCACCGATGTTTAACTTCAACGAGGACGACCTGGCTCGGATTGCTGTCCAGGCTGACAAAGGACAATT
CTATGACAAGCTTCTTGCAGCTCATACTAAATCAGGACTTCATCCAGAAGTCGTGACGCAAGGACTTGAGGCAAAGTTGA
CTCTCTTCATTGAGACTCTATCAGATTGGCGTGATTACAGTAAGTGGCACTCGCTCTATGACCTCATCTGGAAGATTTAT
GACGATCGTTTCTATTATGATTATGTTGGCAGTCTTCCACGAGCTGAGCAACGCCAGGCCAATCTCTACGCCCTTGCCTT
GCGTGCCAATGCCTATGAAAAGACTGGCTTTAAGGGACTTTCTCGTTTTATTGGTATGATTGATAAAATCATTTCTAGCG
GTAACGACCTAGAGGAAGTGACAGACTTGGTTCCCAAAAATGCCGTTAGCCTTATGACCATTCACAAGTCCAAGGGACTA
GAGTTCAAGTATGTCTTTGTCTTGCAGATGAATCGCAAGTTTATTGGTCACAGCAAGGATGGACTAAGTGGTAAGTACAT
CATTAACCGTGAGAAAGGGATTGGTATTAAATACCTGGCTGATCTTAAAGACCAGATAAACACCAATTTGCCTAAGTTAA
ATGTTGTTCTCGAGACCTTGACCTTCCAAGAAAATCAGTTAGAAGAGCGTCGAGCAAGTATTTCAGAAGAGATGCGTCTC
CTCTATGTTGCAATGACCCGTGCTGAGAAAAAACTCTACCTAGTTGGTAAGGGCAGTAAGGAAAAATTGACCCAGCAATT
TGGTACGGATGTTGAAAATGATCGCCTACCAGTAAGCCTACGTGACAAATTATCTACCTATCAGGATTGGGTTATGGCTT
TGGATACCGCCTTTATGAGAAAGGATCTCCAGTTTACTATTCGCTTTGTTGAGGCTGAGGAGTTGACCCCAGAAGCTATT
GGACAGGTTGAAGTTCAAGCAGCAGTAAATGCTGATGATTTATCTAACAATCGCCAGACGGAAGACATTAAGCGTGCCCT
AACCGTCTTGGAAAGTGTTGAGAAACTCAACCAGCTTTATGCTCCAGCGATTGATTTACCATCTGTGCGTACTCCGAGTC
AGCTCAAGTCCTTCTACGAACCAGTTATGGATACAGAGGGTGTGGATATCATGGACAAGAAAGAGGAGGTTCAACCTCTT
GAGACTACCACTAGCTTTGAGCTTCCAGACTTTGGGCAAAAAACCAAGGTCACAGGAGCAGCAGTTGGTTCAGCCACTCA
TGAACTCATGCAACGCTTGATTCTCTCTGGCAAGGTGACCCTCCAAGATTTGACACAGGCCTTGAGTCGGGTTTCAGCTG
ATGATCAAGTCAAGGCGCGTGTGCAGTTGGAAAAGCTGTTAGGATTCTTTGATACAGATCTTGGGAAGCTCATTCTAGCC
AACCGTGATAAGTTGCGCCGTGAAGCACCGTTTGCTATGTTGGCAGAAGACCCGGCTAGTAAGGAAGACTTTGTCGTCCG
TGGTATCATCGATGGCTACCTTCTTCTTGAAGACCGTATTGTCCTCTTTGACTATAAGACAGACCGCTTCACTCAACCTG
GTGAGCTTAAGGAACGCTACAAAGGGCAAATGAGCCTATATGCTAAAGCACTCAGCCAAGCCTATCAAGTAGATAAGATT
GATAAATACCTTATTCTCCTAGGTGGAAAAAACTTGGAAGTCGTGGAAGTATAA


Secondary structure


Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure


Source ID Structure

Transmembrane helices


Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.



Visualization of predicted probability:


Similar proteins


Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rexA Streptococcus pneumoniae R6

50.612

100

0.509