Detailed information    

insolico Bioinformatically predicted

Overview

Name   comE   Type   Machinery gene
Locus tag   J3989_RS01790 Genome accession   NZ_AP024489
Coordinates   371336..371800 (+) Length   154 a.a.
NCBI ID   WP_207177180.1    Uniprot ID   -
Organism   Neisseria meningitidis strain NIID777     
Function   DNA binding (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 366336..376800
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  J3989_RS01790 comE 371336..371800 (+) 465 WP_207177180.1 ComEA family DNA-binding protein Machinery gene
  J3989_RS01795 - 371912..372070 (+) 159 WP_033909552.1 hypothetical protein -
  J3989_RS01800 (NMNIID777_03250) dnaJ 372152..373273 (+) 1122 WP_002215274.1 molecular chaperone DnaJ -
  J3989_RS01805 (NMNIID777_03260) - 373469..375487 (+) 2019 WP_002230175.1 oligopeptide transporter, OPT family -
  J3989_RS01810 (NMNIID777_03270) rfbC 375530..376087 (-) 558 WP_002228846.1 dTDP-4-dehydrorhamnose 3,5-epimerase -

Sequence

Protein


Download         Length: 154 a.a.        Molecular weight: 16535.81 Da        Isoelectric Point: 10.9585

>NTDB_id=85335 J3989_RS01790 WP_207177180.1 371336..371800(+) (comE) [Neisseria meningitidis strain NIID777]
MLCPEKMSVMAGRHPYGVRSGLRRNGLKLWDIHFRMTRFIVARCGLLFATLKGKTMKKMFVLFCMLFSCAFSLAAVNINA
ASQQELEALPGIGPAKAKAIAEYRAQNGAFKSVDDLTKVKGIGPAVLAKLKDQASVGAPAPKAPAKPATTAVKK

Nucleotide


Download         Length: 465 bp        

>NTDB_id=85335 J3989_RS01790 WP_207177180.1 371336..371800(+) (comE) [Neisseria meningitidis strain NIID777]
TTGCTTTGCCCGGAAAAAATGTCGGTGATGGCGGGACGGCATCCGTACGGTGTCCGGTCGGGTTTGCGGAGGAACGGCTT
GAAACTTTGGGATATTCATTTTAGAATGACTCGTTTTATCGTCGCAAGATGCGGTTTATTGTTTGCAACCCTTAAAGGAA
AAACCATGAAGAAAATGTTCGTGCTGTTCTGTATGCTGTTCTCCTGCGCCTTCTCCCTTGCGGCGGTAAACATCAATGCG
GCTTCGCAGCAGGAGTTGGAGGCGCTGCCAGGCATAGGCCCGGCGAAGGCGAAGGCCATTGCGGAATACCGTGCGCAAAA
CGGTGCGTTCAAGTCTGTAGACGATTTGACCAAGGTAAAGGGTATCGGCCCCGCGGTGCTGGCAAAGCTGAAGGATCAGG
CTTCCGTCGGTGCGCCCGCACCCAAAGCCCCCGCCAAACCGGCAACGACCGCAGTGAAAAAATAG

Domains

Predicted by InterproScan.

Helix-hairpin-helix motif (HHH_3)

(75-133)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comE Neisseria gonorrhoeae MS11

91.803

79.221

0.727
  comE Neisseria gonorrhoeae MS11

91.803

79.221

0.727
  comE Neisseria gonorrhoeae MS11

91.803

79.221

0.727
  comE Neisseria gonorrhoeae MS11

91.803

79.221

0.727

Multiple sequence alignment