Detailed information    

insolico Bioinformatically predicted

Overview

Name   recP/tkt   Type   Machinery gene
Locus tag   V6U63_RS02405 Genome accession   NZ_CP145861
Coordinates   472561..474546 (+) Length   661 a.a.
NCBI ID   WP_022496580.1    Uniprot ID   -
Organism   Streptococcus salivarius strain KSS3     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 467561..479546
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  V6U63_RS02385 (V6U63_02390) - 467856..468272 (+) 417 WP_002890211.1 F0F1 ATP synthase subunit epsilon -
  V6U63_RS02390 (V6U63_02395) ftsW 468531..469811 (+) 1281 WP_037601957.1 cell division peptidoglycan polymerase FtsW -
  V6U63_RS02395 (V6U63_02400) tuf 470048..471244 (+) 1197 WP_002886182.1 elongation factor Tu -
  V6U63_RS02400 (V6U63_02405) tpiA 471499..472257 (+) 759 WP_002885895.1 triose-phosphate isomerase -
  V6U63_RS02405 (V6U63_02410) recP/tkt 472561..474546 (+) 1986 WP_022496580.1 transketolase Machinery gene
  V6U63_RS02415 (V6U63_02420) tmk 474838..475467 (+) 630 WP_022496581.1 dTMP kinase -
  V6U63_RS02420 (V6U63_02425) - 475476..476351 (+) 876 WP_022496582.1 DNA polymerase III subunit delta' -
  V6U63_RS02425 (V6U63_02430) yaaT 476348..477154 (+) 807 WP_022496583.1 regulatory iron-sulfur-containing complex subunit RicT Regulator
  V6U63_RS02430 (V6U63_02435) yabA 477141..477461 (+) 321 WP_002887582.1 DNA replication initiation control protein YabA -
  V6U63_RS02435 (V6U63_02440) rsmI 477464..478330 (+) 867 WP_410535236.1 16S rRNA (cytidine(1402)-2'-O)-methyltransferase -

Sequence

Protein


Download         Length: 661 a.a.        Molecular weight: 70836.51 Da        Isoelectric Point: 4.7715

>NTDB_id=853255 V6U63_RS02405 WP_022496580.1 472561..474546(+) (recP/tkt) [Streptococcus salivarius strain KSS3]
MTFDAIDQMAVSTIRSLSIEAIQAANSGHPGLPMGAAPMAYVLWNHVMNVNPKTSRNWTNRDRFVLSAGHGSALLYSLLH
LSGYDVSMDDLKNFRQWGSKTPGHPEVDHTDGVEATSGPLGQGIANAVGMAMAEAHLAAKFNKPGFDIVDHYTYALHGDG
CLMEGVSQEAASLAGHLKLGKLVLLYDSNDISLDGPTSMAFTEDVKAKFEAYGWQHILVKDGNDLEAIAKAIEEAKAETD
KPSIIEVKTIIGYGAEGQGTSAVHGAPIGQDGIDHAKSVYGYDAPAFTVPDEVARRFEVGIKFRGEAAENAWQTKFAEYE
AAYPELAAEYKAAFANEPVHVDLKAHEVGSAVASRVSSQQAIQQISEQVPSFWGGSADLSASNNTMVKAESDFQADNYAG
RNIWFGVREFAMAAAMNGIALHGGTRVYGGTFFVFSNYLLPAVRMAALQNLPVTYVMTHDSVAVGEDGPTHEPIEQLASV
RSMPNLNVIRPADGNETNAAWKRALAETERPTMLVLTRQNLPVLDGTAENAEAGVNKGAYIISEAKGDLDGIIIATGSEV
KLALDTQAALEAEGVHVRVVSMPSQNLFDEQDAAYKEEVLPAAVTKRLAIEAGTSFGWGKYVGLAGKTLTIDTWGASAPG
DRIFKEYGFTVENASQLYKSL

Nucleotide


Download         Length: 1986 bp        

>NTDB_id=853255 V6U63_RS02405 WP_022496580.1 472561..474546(+) (recP/tkt) [Streptococcus salivarius strain KSS3]
ATGACTTTTGATGCAATTGACCAAATGGCGGTCAGCACTATTCGTTCGCTTTCGATCGAGGCCATTCAAGCCGCGAATTC
TGGACACCCAGGTCTTCCTATGGGTGCAGCGCCAATGGCATATGTACTTTGGAACCATGTGATGAATGTTAATCCAAAGA
CTAGCCGTAACTGGACAAACCGTGACCGTTTTGTTCTTTCTGCAGGTCATGGTTCTGCTTTGCTTTATAGTCTCTTGCAC
CTTTCAGGCTATGATGTATCAATGGATGATTTGAAGAACTTCCGTCAATGGGGTTCTAAGACTCCGGGTCACCCTGAAGT
TGATCATACTGATGGTGTTGAAGCAACATCAGGTCCTCTTGGTCAAGGAATTGCTAATGCAGTAGGTATGGCAATGGCTG
AAGCACATTTGGCTGCTAAATTTAACAAACCTGGTTTTGATATTGTTGACCATTATACTTATGCCCTCCATGGAGATGGT
TGTTTGATGGAAGGTGTTTCTCAAGAAGCTGCTAGTCTTGCTGGTCATCTTAAACTTGGTAAATTGGTTCTTCTTTACGA
TTCAAACGATATTTCGCTTGATGGACCAACATCAATGGCTTTCACTGAGGATGTTAAGGCTAAGTTTGAAGCTTATGGTT
GGCAACACATCCTTGTTAAAGATGGTAATGATTTGGAAGCTATTGCTAAAGCTATCGAAGAAGCTAAAGCTGAGACAGAT
AAACCATCTATTATCGAAGTTAAGACAATCATTGGTTACGGAGCTGAAGGACAAGGAACATCAGCTGTCCACGGTGCTCC
AATTGGTCAAGACGGCATTGATCACGCAAAAAGTGTTTACGGTTACGATGCACCGGCATTTACAGTTCCAGATGAAGTTG
CTCGTCGTTTTGAAGTTGGTATTAAATTCCGTGGTGAAGCTGCTGAAAATGCTTGGCAAACTAAATTTGCAGAATATGAA
GCTGCTTACCCAGAGTTGGCTGCTGAATACAAGGCTGCCTTTGCGAATGAACCTGTACACGTTGACTTGAAGGCTCATGA
AGTGGGTTCAGCAGTAGCTAGCCGTGTGTCAAGCCAACAAGCTATCCAACAGATTTCTGAACAAGTTCCTTCATTCTGGG
GAGGTTCGGCAGACCTTTCAGCTTCTAACAATACTATGGTTAAGGCTGAGTCTGATTTCCAAGCAGATAACTATGCTGGA
CGTAATATTTGGTTCGGTGTACGTGAGTTTGCTATGGCTGCAGCAATGAATGGTATTGCCCTTCATGGTGGTACTCGTGT
TTATGGTGGTACTTTCTTTGTCTTCTCAAACTACTTGCTTCCAGCAGTACGTATGGCAGCACTTCAAAACTTACCAGTAA
CTTATGTTATGACGCACGACTCAGTAGCAGTTGGTGAAGATGGACCTACTCACGAACCAATCGAACAATTGGCAAGTGTG
CGTTCAATGCCTAACCTTAACGTTATCCGTCCTGCAGATGGTAATGAAACTAATGCTGCTTGGAAACGTGCCTTGGCTGA
GACTGAACGTCCAACAATGCTAGTTTTGACACGTCAAAACTTGCCAGTCCTTGACGGTACAGCTGAAAATGCTGAAGCTG
GTGTCAATAAAGGGGCTTACATCATCTCAGAAGCTAAAGGTGATCTTGATGGTATTATCATTGCGACTGGTTCAGAAGTG
AAATTGGCGCTTGATACGCAAGCTGCTCTTGAAGCAGAAGGTGTGCATGTTCGTGTTGTTTCAATGCCATCACAAAATCT
CTTTGATGAACAAGATGCTGCTTACAAAGAAGAAGTTCTTCCAGCAGCTGTTACAAAACGTTTGGCTATTGAAGCCGGAA
CTAGCTTTGGTTGGGGCAAATATGTTGGTCTTGCAGGTAAAACACTTACTATTGATACTTGGGGTGCATCAGCACCTGGT
GACCGTATCTTTAAGGAATATGGTTTCACTGTTGAAAATGCAAGTCAACTTTACAAATCATTGTAA

Domains

Predicted by InterProScan.

Transketolase, C-terminal domain (Transketolase_C)

(552-652)

Transketolase, pyrimidine binding domain (Transket_pyr)

(352-522)

Transketolase, thiamine diphosphate binding domain (Transketolase_N)

(6-334)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recP/tkt Streptococcus pneumoniae TIGR4

56.991

99.546

0.567