Detailed information    

insolico Bioinformatically predicted

Overview

Name   cqsA   Type   Regulator
Locus tag   QYQ96_RS14615 Genome accession   NZ_CP129422
Coordinates   311260..312429 (+) Length   389 a.a.
NCBI ID   WP_304573113.1    Uniprot ID   -
Organism   Vibrio metoecus strain ZF102     
Function   induction of competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 306260..317429
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QYQ96_RS14600 (QYQ96_14600) - 307092..308081 (-) 990 WP_057555551.1 GTP-binding protein -
  QYQ96_RS14605 (QYQ96_14605) clcA 308548..309954 (+) 1407 WP_158106257.1 H(+)/Cl(-) exchange transporter ClcA -
  QYQ96_RS14610 (QYQ96_14610) - 310101..311063 (+) 963 WP_304573112.1 TDT family transporter -
  QYQ96_RS14615 (QYQ96_14615) cqsA 311260..312429 (+) 1170 WP_304573113.1 alpha-hydroxyketone-type quorum-sensing autoinducer synthase Regulator
  QYQ96_RS14620 (QYQ96_14620) cqsS 312479..314527 (-) 2049 WP_081018722.1 quorum-sensing CAI-1 autoinducer sensor kinase/phosphatase CqsS Regulator

Sequence

Protein


Download         Length: 389 a.a.        Molecular weight: 43661.83 Da        Isoelectric Point: 6.3101

>NTDB_id=853173 QYQ96_RS14615 WP_304573113.1 311260..312429(+) (cqsA) [Vibrio metoecus strain ZF102]
MNRPQLPDFIQDKISHYIENYFDINKNGKHLVLGKHASSDDIILQSNDYLALANHPLIKARLAKSLLEEQQSLFMSASFL
QNDYDKPLLEKRLAQFTGFDECLLSQSGWNANVGLLQTICQPNTNVYIDFFAHMSLWEGIRYANAQAHPFMHNNCDHLRM
LIQRHGPGIIVVDSIYSTIGTIAPLTELVKISQEFGCALVVDESHSLGTHGPKGAGLLAELNLTSQVHFMTASLAKTFAY
RAGAIWCNNEVNRCVPFISYPAIFSSTLLPYEAAGLETTLEIIQCADNKREHLERMARKLRIGLTQLGITIRSESQIIGL
ETGDERNTEKVRDFLENNGVFGSVFCRPATSKNKNIIRLSLNSDVTEEEISKIIEICSDAVKCGDFYFR

Nucleotide


Download         Length: 1170 bp        

>NTDB_id=853173 QYQ96_RS14615 WP_304573113.1 311260..312429(+) (cqsA) [Vibrio metoecus strain ZF102]
ATGAATAGACCACAACTTCCTGATTTTATTCAGGATAAGATAAGTCACTATATTGAAAATTATTTTGATATAAACAAAAA
CGGTAAACACCTCGTATTAGGTAAACATGCCAGCAGTGATGACATTATTTTGCAAAGTAATGACTATTTAGCGTTAGCAA
ATCATCCATTGATTAAAGCTCGCTTAGCTAAATCATTACTGGAAGAGCAACAAAGTTTATTTATGTCAGCATCATTTTTA
CAAAATGATTATGACAAACCGTTGCTTGAAAAACGCTTAGCCCAGTTCACGGGGTTTGATGAGTGTTTATTATCTCAATC
AGGTTGGAACGCGAATGTGGGTTTACTGCAAACCATCTGCCAACCCAATACGAATGTTTACATCGATTTCTTTGCTCACA
TGTCATTATGGGAAGGAATACGCTACGCCAATGCGCAAGCGCACCCTTTTATGCACAACAACTGTGACCACTTGCGCATG
CTGATTCAACGTCATGGGCCTGGAATCATCGTGGTCGATTCGATTTACAGCACCATTGGGACTATTGCTCCATTAACTGA
GTTGGTAAAAATTAGTCAGGAGTTTGGTTGCGCTTTGGTGGTGGATGAGTCCCACTCACTAGGCACGCATGGACCTAAAG
GTGCAGGATTATTAGCTGAATTGAATCTCACCTCACAGGTTCATTTTATGACTGCCAGCCTAGCAAAAACGTTTGCTTAT
CGCGCTGGAGCTATCTGGTGTAATAATGAAGTCAATCGATGCGTTCCTTTTATTAGTTATCCAGCCATCTTCAGCTCAAC
GTTACTGCCCTATGAAGCCGCTGGATTAGAAACTACATTAGAGATTATTCAATGTGCCGATAATAAACGGGAGCACTTAG
AACGTATGGCAAGAAAATTACGGATTGGTTTAACCCAATTAGGGATAACGATCCGTAGTGAAAGCCAGATTATTGGCTTA
GAAACCGGTGATGAGAGAAATACGGAAAAAGTTCGTGACTTTTTAGAAAATAACGGCGTGTTTGGTTCTGTATTTTGTCG
TCCTGCGACCTCAAAAAACAAGAACATTATTCGTTTATCTCTCAATAGTGATGTAACTGAAGAAGAGATTTCAAAAATAA
TTGAAATTTGCTCTGACGCAGTGAAATGTGGTGATTTTTATTTTCGATAG

Domains

Predicted by InterproScan.

Aminotransferase class I and II (Aminotran_1_2)

(41-375)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  cqsA Vibrio cholerae strain A1552

91.26

100

0.913