Detailed information    

insolico Bioinformatically predicted

Overview

Name   xerS   Type   Machinery gene
Locus tag   V6U62_RS05020 Genome accession   NZ_CP145860
Coordinates   1108299..1109369 (-) Length   356 a.a.
NCBI ID   WP_002884881.1    Uniprot ID   -
Organism   Streptococcus salivarius strain KSS2     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1103299..1114369
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  V6U62_RS05005 (V6U62_04995) pstB 1104022..1104780 (+) 759 WP_002884992.1 phosphate ABC transporter ATP-binding protein PstB -
  V6U62_RS05010 (V6U62_05000) phoU 1104809..1105462 (+) 654 WP_195187534.1 phosphate signaling complex protein PhoU -
  V6U62_RS05015 (V6U62_05005) - 1105596..1108136 (+) 2541 WP_195914608.1 M1 family metallopeptidase -
  V6U62_RS05020 (V6U62_05010) xerS 1108299..1109369 (-) 1071 WP_002884881.1 tyrosine recombinase XerS Machinery gene
  V6U62_RS05025 (V6U62_05015) - 1109637..1110626 (-) 990 WP_049545534.1 lipoate--protein ligase -
  V6U62_RS05030 (V6U62_05020) - 1110735..1111490 (+) 756 WP_349955276.1 hypothetical protein -
  V6U62_RS05035 (V6U62_05025) - 1111519..1111866 (+) 348 WP_410535588.1 hypothetical protein -
  V6U62_RS05040 (V6U62_05030) glgP 1111978..1114239 (-) 2262 WP_037611558.1 glycogen/starch/alpha-glucan family phosphorylase -

Sequence

Protein


Download         Length: 356 a.a.        Molecular weight: 41397.47 Da        Isoelectric Point: 9.3734

>NTDB_id=853174 V6U62_RS05020 WP_002884881.1 1108299..1109369(-) (xerS) [Streptococcus salivarius strain KSS2]
MKRELLLEKIEEYKSLMPWFVLEYYQSKLSVPYSFTTLYEYLKEYKRFFDWLIDSGISDADDIASIDIKTLENLTKKDME
SFVLYLRERPSLNTYSKKQGVSQTTINRTLSALSSLYKYLTEEVEGPDGEPYFYRNVMKKVSTKKKKETLAARAENIKQK
LFLGDETMEFLDYVENEYEVKLSNRAKSSFYKNKERDLAIIALLLASGVRLSEAVNLDLKDINLKMMVIDVTRKGGKRDS
VNVASFAKPYLETYLSIRDKRYKAEKQDVALFLTEYRGVPNRIDASSIEKMVAKYSQDFKIRVTPHKLRHTLATRLYDAT
KSQVLVSHQLGHASTQVTDLYTHIVNDEQKNALDNL

Nucleotide


Download         Length: 1071 bp        

>NTDB_id=853174 V6U62_RS05020 WP_002884881.1 1108299..1109369(-) (xerS) [Streptococcus salivarius strain KSS2]
ATGAAACGTGAACTCTTACTCGAAAAAATTGAGGAATACAAATCTCTAATGCCCTGGTTTGTTCTAGAGTATTATCAATC
TAAACTATCGGTACCGTATTCTTTTACAACCCTATACGAATACCTTAAGGAATATAAACGCTTTTTTGACTGGTTGATTG
ACTCAGGTATTTCAGATGCTGATGATATTGCCTCAATTGACATCAAAACCTTGGAAAATCTAACTAAAAAAGATATGGAG
TCATTTGTCCTTTATTTACGTGAACGTCCATCTTTGAATACCTATTCCAAGAAACAGGGTGTCTCTCAAACGACTATTAA
TCGTACACTTTCAGCTCTATCTAGTCTCTATAAGTATTTAACCGAGGAGGTCGAGGGTCCTGACGGTGAGCCTTATTTCT
ATCGTAACGTCATGAAAAAAGTTTCTACTAAGAAAAAGAAAGAAACTCTAGCTGCTCGTGCTGAGAATATCAAACAGAAA
CTCTTTCTAGGCGATGAGACCATGGAATTCCTTGATTATGTAGAAAATGAATACGAAGTCAAGCTCTCAAATCGCGCTAA
ATCATCGTTTTATAAGAATAAAGAACGTGATTTAGCTATCATTGCCTTGCTGCTGGCTTCAGGTGTTCGACTCTCTGAAG
CTGTTAATCTAGACCTTAAAGATATCAATCTTAAAATGATGGTCATTGATGTTACTCGAAAAGGTGGCAAACGAGACTCA
GTTAATGTTGCAAGTTTTGCAAAGCCCTATCTTGAAACTTATCTCAGTATACGTGATAAACGCTATAAGGCTGAAAAGCA
AGATGTTGCCCTCTTTTTAACGGAATATCGAGGGGTTCCAAACCGTATTGATGCTTCAAGTATCGAAAAGATGGTTGCCA
AATATTCTCAGGATTTCAAAATTCGTGTGACTCCCCACAAGCTTCGACATACTCTGGCAACACGCCTTTATGATGCTACC
AAGTCTCAAGTTTTAGTTAGTCACCAACTTGGTCATGCTTCCACTCAGGTCACCGATCTATATACGCATATTGTTAATGA
TGAGCAAAAAAATGCTCTAGACAATTTATAA

Domains

Predicted by InterProScan.

Phage integrase, N-terminal SAM-like domain (Phage_int_SAM_4)

(33-122)

Phage integrase family (Phage_integrase)

(183-344)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  xerS Streptococcus pneumoniae R6

83.427

100

0.834