Detailed information    

insolico Bioinformatically predicted

Overview

Name   cqsS   Type   Regulator
Locus tag   QYQ96_RS14620 Genome accession   NZ_CP129422
Coordinates   312479..314527 (-) Length   682 a.a.
NCBI ID   WP_081018722.1    Uniprot ID   -
Organism   Vibrio metoecus strain ZF102     
Function   autoinducer sensor (predicted from homology)   
Competence regulation

Genomic Context

Location: 307479..319527
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QYQ96_RS14605 (QYQ96_14605) clcA 308548..309954 (+) 1407 WP_158106257.1 H(+)/Cl(-) exchange transporter ClcA -
  QYQ96_RS14610 (QYQ96_14610) - 310101..311063 (+) 963 WP_304573112.1 TDT family transporter -
  QYQ96_RS14615 (QYQ96_14615) cqsA 311260..312429 (+) 1170 WP_304573113.1 alpha-hydroxyketone-type quorum-sensing autoinducer synthase Regulator
  QYQ96_RS14620 (QYQ96_14620) cqsS 312479..314527 (-) 2049 WP_081018722.1 quorum-sensing CAI-1 autoinducer sensor kinase/phosphatase CqsS Regulator
  QYQ96_RS14625 (QYQ96_14625) - 314639..317680 (-) 3042 WP_304573114.1 SMC family ATPase -
  QYQ96_RS14630 (QYQ96_14630) - 317682..318821 (-) 1140 WP_055030496.1 exonuclease SbcCD subunit D -

Sequence

Protein


Download         Length: 682 a.a.        Molecular weight: 77835.75 Da        Isoelectric Point: 5.1220

>NTDB_id=853174 QYQ96_RS14620 WP_081018722.1 312479..314527(-) (cqsS) [Vibrio metoecus strain ZF102]
MDVIKKVYQYAEPNLSLVGWMGMLGFPAYYFIWEYWFPQVYENLGLRCAAAVLFAGLAFRGSFPKKWQRYMPHYFLLTIG
FCLPFFFCFMMLMNDWSTIWAMSFMASIFLHILLVHDTKVMALQAIFSVLMAYLAVYGFTDFRPSTLIEWPYIPVFLFTY
VFGNLCFFRNQISHETKVSIAKTFGAGIAHEMRNPLSALKTSIDVIRTMIPKPQAAAQAAYPLDAQELDLLHQILNEADD
VIYSGNNTIDLLLTSIDENRVSTASFKKYSAADVIEKALKTFPYKNVADQHAVQLEVIQPFDFFGSDTLLSYALFNLLKN
AFYYQKEQFSVRIQIEQSDECNLIKVRDNGVGIASEMLEDIFRDFYTFGKNGSYGLGLPFCRKVMTAFGGSIRCFSQQGE
WTEFVLAFPRYDSDVVQDIKADLLKSKSLIYIGSNQAIVRELNQLALEDEFKFTAISAVQAVRRQDYEFEFDLILLDLDE
ATAQGELLPKLEGTLSFTEGCIGYVYDPAKEYAVNINRYLHIQPISIHAVLRKPRSIIDRLLFEQDSLLMNRNAIPVQKS
RHERRILVVDDNQSIRTFTSILLEQQGYEVIQANDGSEVLTHMDEHTIDLVLMDIEMPNVGGLEATHLIRSSDRAYKNIP
IIGYTGDNSPKTLALIQTSGMNDFIVKPADRDVLLNKVAAWV

Nucleotide


Download         Length: 2049 bp        

>NTDB_id=853174 QYQ96_RS14620 WP_081018722.1 312479..314527(-) (cqsS) [Vibrio metoecus strain ZF102]
ATGGATGTGATAAAGAAAGTTTACCAGTACGCAGAACCCAATCTTTCTTTAGTGGGATGGATGGGGATGCTTGGCTTTCC
AGCCTACTATTTCATTTGGGAATACTGGTTTCCACAAGTCTATGAGAACTTAGGTTTGCGCTGTGCTGCTGCAGTCTTGT
TCGCAGGGCTGGCATTTCGTGGCTCATTCCCCAAAAAATGGCAGCGCTACATGCCGCACTATTTTTTGTTGACCATAGGC
TTCTGTTTGCCTTTTTTCTTTTGTTTCATGATGTTAATGAACGATTGGTCAACGATTTGGGCTATGTCGTTCATGGCATC
GATATTTCTGCACATCTTACTTGTGCATGATACAAAAGTGATGGCACTACAAGCTATCTTCTCTGTGTTGATGGCTTACC
TTGCAGTGTATGGTTTTACGGATTTTCGTCCCTCAACCTTGATTGAGTGGCCGTATATTCCCGTTTTTTTGTTTACTTAT
GTTTTTGGCAATCTGTGTTTCTTTCGTAATCAGATTTCTCATGAAACCAAAGTCTCCATTGCTAAAACCTTTGGGGCTGG
GATTGCGCATGAAATGCGTAATCCACTCAGTGCACTCAAAACGTCTATCGATGTTATTCGGACCATGATCCCAAAACCAC
AAGCGGCGGCTCAAGCTGCATACCCGCTGGATGCGCAAGAGCTGGATCTATTACATCAGATTTTGAATGAAGCCGATGAT
GTTATCTATTCTGGAAATAACACCATTGATTTATTGCTGACGTCGATCGATGAAAACCGTGTTTCTACCGCGAGTTTTAA
AAAATACTCTGCAGCCGATGTTATCGAAAAAGCTCTGAAAACGTTCCCGTATAAAAATGTGGCGGATCAGCACGCTGTTC
AGCTTGAAGTTATCCAACCGTTTGATTTTTTTGGCAGTGATACGTTATTGAGTTATGCATTGTTTAACTTATTGAAAAAT
GCCTTTTATTACCAAAAAGAACAATTCTCTGTGCGGATTCAGATTGAACAAAGTGACGAGTGTAACCTGATTAAAGTTCG
TGATAACGGTGTCGGGATCGCATCTGAAATGCTGGAAGATATTTTCCGTGATTTTTACACTTTCGGTAAAAATGGCAGCT
ATGGGCTTGGCTTACCATTTTGTCGAAAAGTGATGACGGCTTTTGGTGGCAGTATTCGTTGTTTTTCACAGCAAGGTGAA
TGGACGGAGTTTGTACTGGCGTTCCCTCGTTACGATTCTGATGTGGTACAAGACATTAAAGCGGATTTATTAAAGTCTAA
ATCTTTGATTTATATTGGGTCAAACCAAGCGATTGTTCGAGAGCTGAATCAATTAGCGCTAGAAGATGAGTTTAAATTCA
CGGCTATTTCTGCTGTACAGGCGGTGAGACGACAAGATTACGAATTTGAGTTTGATCTGATTTTGCTGGATTTGGATGAG
GCGACAGCGCAAGGCGAATTACTTCCTAAGCTGGAAGGCACATTAAGTTTTACAGAAGGCTGCATTGGCTATGTGTATGA
TCCGGCCAAAGAGTATGCCGTTAATATCAATCGATACTTACATATTCAACCGATAAGTATCCATGCGGTGCTTCGTAAAC
CTAGAAGTATCATAGATCGTTTATTGTTTGAACAAGATTCACTGTTGATGAATCGTAACGCGATTCCGGTGCAGAAGAGT
CGTCATGAGCGGCGAATTCTGGTGGTGGATGACAATCAATCCATCCGCACATTTACGTCTATCCTACTTGAACAGCAAGG
ATACGAAGTAATACAAGCGAATGATGGCAGCGAAGTCCTCACTCATATGGATGAACACACGATTGATCTGGTATTGATGG
ATATTGAAATGCCGAATGTGGGTGGATTAGAGGCCACTCACTTAATTCGCAGCTCTGATCGCGCTTATAAAAACATCCCA
ATTATAGGTTATACCGGTGATAACAGCCCGAAAACATTAGCGTTGATACAGACGTCGGGGATGAATGATTTTATTGTTAA
ACCCGCCGATCGTGATGTATTACTCAATAAAGTTGCAGCGTGGGTATAA

Domains

Predicted by InterproScan.

Response regulator receiver domain (Response_reg)

(566-678)

Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase (HATPase_c)

(309-409)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  cqsS Vibrio cholerae strain A1552

87.977

100

0.88