Detailed information    

insolico Bioinformatically predicted

Overview

Name   hapR   Type   Regulator
Locus tag   QYQ96_RS10930 Genome accession   NZ_CP129421
Coordinates   2418831..2419442 (+) Length   203 a.a.
NCBI ID   WP_000340092.1    Uniprot ID   -
Organism   Vibrio metoecus strain ZF102     
Function   regulate expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 2413831..2424442
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QYQ96_RS10910 (QYQ96_10910) - 2414352..2415269 (-) 918 WP_304572797.1 ABC transporter ATP-binding protein -
  QYQ96_RS10915 (QYQ96_10915) - 2415448..2417100 (-) 1653 WP_304572798.1 SulP family inorganic anion transporter -
  QYQ96_RS10920 (QYQ96_10920) can 2417250..2417918 (+) 669 WP_001114114.1 carbonate dehydratase -
  QYQ96_RS10925 (QYQ96_10925) hpt 2418004..2418537 (-) 534 WP_000683344.1 hypoxanthine phosphoribosyltransferase -
  QYQ96_RS10930 (QYQ96_10930) hapR 2418831..2419442 (+) 612 WP_000340092.1 quorum-sensing master transcriptional regulator HapR Regulator
  QYQ96_RS10935 (QYQ96_10935) rsmI 2419520..2420386 (-) 867 WP_055033952.1 16S rRNA (cytidine(1402)-2'-O)-methyltransferase -
  QYQ96_RS10940 (QYQ96_10940) - 2420456..2422261 (+) 1806 WP_304572799.1 penicillin-binding protein activator -
  QYQ96_RS10945 (QYQ96_10945) - 2422248..2422616 (+) 369 WP_000508147.1 YraN family protein -
  QYQ96_RS10950 (QYQ96_10950) - 2422620..2423210 (+) 591 WP_000887295.1 phosphoheptose isomerase -
  QYQ96_RS10955 (QYQ96_10955) - 2423213..2423782 (+) 570 WP_000835997.1 BON domain-containing protein -
  QYQ96_RS10960 (QYQ96_10960) sspB 2423856..2424320 (-) 465 WP_304572183.1 ClpXP protease specificity-enhancing factor -

Sequence

Protein


Download         Length: 203 a.a.        Molecular weight: 23689.36 Da        Isoelectric Point: 6.6352

>NTDB_id=853156 QYQ96_RS10930 WP_000340092.1 2418831..2419442(+) (hapR) [Vibrio metoecus strain ZF102]
MDASIEKRPRTRLSPQKRKLQLMEIALEVFAKRGIGRGGHADIAEIAQVSVATVFNYFPTREDLVDDVLNFVVRQYSNFL
TDHIDLDLDVKSNLQTLCKEMVKLTMNDCHWLKVWFEWSASTRDEVWPLFVSTNRTNQLLIKNMFIKAMERGELCEKHDV
DNMASLFHGIFYSIFLQVNRLGDQEAVYKLVDSYLNMLCIYKN

Nucleotide


Download         Length: 612 bp        

>NTDB_id=853156 QYQ96_RS10930 WP_000340092.1 2418831..2419442(+) (hapR) [Vibrio metoecus strain ZF102]
ATGGACGCATCAATCGAAAAACGCCCTCGGACTCGGCTGTCGCCACAAAAACGTAAACTGCAACTGATGGAAATCGCATT
AGAAGTGTTTGCAAAGCGTGGTATAGGCCGCGGTGGTCACGCAGACATCGCAGAGATTGCACAAGTCTCAGTAGCAACGG
TGTTTAACTACTTTCCAACTCGCGAAGACTTAGTCGACGATGTACTGAATTTTGTGGTTCGCCAATATTCCAACTTCCTC
ACCGATCACATCGATCTGGACTTGGATGTTAAAAGCAACCTACAAACATTGTGCAAAGAGATGGTCAAACTGACCATGAA
CGACTGCCATTGGCTAAAAGTATGGTTTGAATGGAGCGCATCGACTCGTGATGAGGTATGGCCGTTGTTTGTTTCGACGA
ACCGTACTAATCAGCTACTGATCAAAAACATGTTCATCAAAGCCATGGAGCGTGGTGAGTTGTGTGAAAAACATGATGTA
GACAATATGGCGAGCTTGTTCCACGGCATCTTCTACTCCATCTTCTTGCAAGTAAACCGCTTAGGTGATCAGGAAGCCGT
GTATAAATTGGTCGATAGCTATCTCAATATGTTGTGTATCTACAAAAACTAG

Domains

Predicted by InterproScan.

Bacterial regulatory proteins, tetR family (TetR_N)

(23-67)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  hapR Vibrio cholerae C6706

96.552

100

0.966
  hapR Vibrio cholerae strain A1552

96.552

100

0.966
  opaR Vibrio parahaemolyticus RIMD 2210633

73.232

97.537

0.714