Detailed information    

insolico Bioinformatically predicted

Overview

Name   comE/comE1   Type   Regulator
Locus tag   V6U62_RS02515 Genome accession   NZ_CP145860
Coordinates   480349..481086 (+) Length   245 a.a.
NCBI ID   WP_021143758.1    Uniprot ID   -
Organism   Streptococcus salivarius strain KSS2     
Function   activate transcription of early competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 475349..486086
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  V6U62_RS02500 (V6U62_02490) - 476269..477021 (+) 753 WP_349955298.1 DUF4767 domain-containing protein -
  V6U62_RS02505 (V6U62_02495) tehB 477104..477982 (-) 879 WP_145516713.1 SAM-dependent methyltransferase TehB -
  V6U62_RS02510 (V6U62_02500) - 478762..480135 (-) 1374 WP_410534959.1 matrixin family metalloprotease -
  V6U62_RS02515 (V6U62_02505) comE/comE1 480349..481086 (+) 738 WP_021143758.1 LytR/AlgR family response regulator transcription factor Regulator
  V6U62_RS02520 (V6U62_02510) - 481398..482576 (+) 1179 WP_037598353.1 sensor histidine kinase -
  V6U62_RS02525 (V6U62_02515) - 482688..484067 (+) 1380 WP_080611859.1 hypothetical protein -
  V6U62_RS02530 (V6U62_02520) rpsP 484234..484506 (+) 273 WP_002884675.1 30S ribosomal protein S16 -
  V6U62_RS02535 (V6U62_02525) - 484518..484766 (+) 249 WP_002884680.1 KH domain-containing protein -

Sequence

Protein


Download         Length: 245 a.a.        Molecular weight: 28132.10 Da        Isoelectric Point: 4.7169

>NTDB_id=853152 V6U62_RS02515 WP_021143758.1 480349..481086(+) (comE/comE1) [Streptococcus salivarius strain KSS2]
MLSIIVLEDDALQRHRVGRLLDEAVEESKAVVDGITFYEQGQELLDADRGSGKSMVYLLDIDLKNQTKQGLDIGLEIRKE
DLKAQIAFVTAYSEFMPLTFRYKIQALDFVDKSMEDVDLKRALVELLDFAYSQVEQETKAQSLTVKTDKNDVNIPYDDIL
YIETAPVPHKLIAHTKSNLVEFYGKIAEVAKLDDIFFQTHRSFVVNVNNVTSVDRTANMVFFEENESCLLSRTRKKELLE
RLKNR

Nucleotide


Download         Length: 738 bp        

>NTDB_id=853152 V6U62_RS02515 WP_021143758.1 480349..481086(+) (comE/comE1) [Streptococcus salivarius strain KSS2]
ATGCTTTCTATTATCGTCCTTGAAGATGATGCCTTGCAGCGTCATCGTGTTGGTCGTTTATTGGACGAAGCAGTTGAGGA
GTCGAAGGCCGTTGTTGATGGGATTACTTTTTATGAACAGGGTCAGGAATTGTTAGATGCTGATAGAGGTTCGGGTAAAT
CCATGGTTTATCTTTTGGATATTGACCTTAAAAATCAAACTAAGCAGGGACTAGATATTGGGCTTGAAATCCGTAAGGAA
GACTTGAAAGCACAAATTGCCTTTGTTACAGCTTACTCGGAGTTTATGCCCTTGACCTTCCGTTATAAGATTCAAGCTCT
AGACTTTGTCGATAAATCCATGGAAGATGTGGATCTTAAGAGAGCTTTAGTAGAACTTTTAGATTTTGCTTATTCACAGG
TTGAGCAAGAAACCAAGGCACAGAGTCTAACTGTTAAAACGGATAAAAATGATGTTAATATTCCTTATGATGACATTTTA
TACATTGAGACAGCCCCTGTGCCACATAAGTTAATCGCTCATACCAAGTCAAACCTAGTGGAATTCTATGGGAAAATTGC
AGAAGTAGCAAAATTGGATGATATTTTCTTCCAAACGCACCGCTCTTTTGTTGTCAATGTGAATAATGTGACAAGTGTGG
ATCGTACAGCTAATATGGTCTTCTTTGAGGAAAATGAGTCATGCCTCCTATCGCGGACACGTAAAAAGGAACTTTTGGAA
CGTTTGAAAAATCGTTAG

Domains

Predicted by InterProScan.

LytTr DNA-binding domain (LytTR)

(152-242)

Response regulator receiver domain (Response_reg)

(4-123)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comE/comE1 Streptococcus equinus JB1

37.449

99.184

0.371