Detailed information    

insolico Bioinformatically predicted

Overview

Name   luxO   Type   Regulator
Locus tag   QYQ96_RS08925 Genome accession   NZ_CP129421
Coordinates   1959242..1960609 (-) Length   455 a.a.
NCBI ID   WP_081018466.1    Uniprot ID   -
Organism   Vibrio metoecus strain ZF102     
Function   promote HapR production (predicted from homology)   
Competence regulation

Genomic Context

Location: 1954242..1965609
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QYQ96_RS08890 (QYQ96_08890) moaE 1954954..1955415 (-) 462 WP_000350085.1 molybdopterin synthase catalytic subunit MoaE -
  QYQ96_RS08895 (QYQ96_08895) moaD 1955417..1955662 (-) 246 WP_055027251.1 molybdopterin synthase sulfur carrier subunit -
  QYQ96_RS08900 (QYQ96_08900) moaC 1955659..1956138 (-) 480 WP_095474826.1 cyclic pyranopterin monophosphate synthase MoaC -
  QYQ96_RS08905 (QYQ96_08905) moaB 1956150..1956662 (-) 513 WP_304572053.1 molybdenum cofactor biosynthesis protein B -
  QYQ96_RS08910 (QYQ96_08910) moaA 1956722..1957711 (-) 990 WP_304572054.1 GTP 3',8-cyclase MoaA -
  QYQ96_RS08915 (QYQ96_08915) - 1958018..1958914 (+) 897 WP_304572055.1 YvcK family protein -
  QYQ96_RS08920 (QYQ96_08920) luxU 1958897..1959238 (-) 342 WP_001209529.1 quorum-sensing phosphorelay protein LuxU -
  QYQ96_RS08925 (QYQ96_08925) luxO 1959242..1960609 (-) 1368 WP_081018466.1 quorum-sensing sigma-54 dependent transcriptional regulator LuxO Regulator
  QYQ96_RS08930 (QYQ96_08930) uvrB 1960926..1962956 (-) 2031 WP_095476516.1 excinuclease ABC subunit UvrB -
  QYQ96_RS08940 (QYQ96_08940) rsxA 1963838..1964419 (+) 582 WP_304572056.1 electron transport complex subunit RsxA -
  QYQ96_RS08945 (QYQ96_08945) rsxB 1964419..1965006 (+) 588 WP_055043864.1 electron transport complex subunit RsxB -

Sequence

Protein


Download         Length: 455 a.a.        Molecular weight: 50920.16 Da        Isoelectric Point: 5.5459

>NTDB_id=853152 QYQ96_RS08925 WP_081018466.1 1959242..1960609(-) (luxO) [Vibrio metoecus strain ZF102]
MVEDTASVAALYRSYLTPLDIDINIVGTGRDAIESISRREPDLILLDLRLPDMTGMDVLHAVKEKSPDVPIVFMTAHGSI
DTAVEAMRHGAQDFLIKPCEADRLRVTVNNAIRKASKLKNDVDNKNQNYQGFIGSSQTMQAVYRTIDSAASSKASIFITG
ESGTGKEVCAEAIHAASKRGDKPFIAINCAAIPKDLIESELFGHVKGAFTGAATERQGAAEAADGGTLFLDELCEMDLDL
QTKLLRFIQTGTFQKVGSSKMKSVDVRFVCATNRDPWKEVQEGRFREDLYYRLYVIPLHLPPLRERGDDVIEIAYSLLGF
MSKEEGKDFVRLSAEVVERFRHYEWPGNVRQLQNVLRNVVVLNEGREITLDMLPPPLNQMPTPINRALPLAHENKVSVHE
IFPLWMTEKQAIEQAIEACDGNIPRAATYLDVSPSTIYRKLQAWNEKVQEKEKER

Nucleotide


Download         Length: 1368 bp        

>NTDB_id=853152 QYQ96_RS08925 WP_081018466.1 1959242..1960609(-) (luxO) [Vibrio metoecus strain ZF102]
ATGGTAGAAGATACAGCGTCGGTGGCGGCGTTGTATCGCTCTTATCTCACCCCGCTGGATATTGATATCAATATCGTCGG
CACAGGGCGCGATGCAATTGAAAGCATCAGTCGCCGTGAGCCGGATCTGATCCTGCTTGATTTACGTTTACCGGATATGA
CGGGGATGGATGTCCTGCATGCAGTAAAAGAAAAATCACCAGATGTACCCATTGTGTTCATGACGGCGCACGGTTCAATT
GATACCGCGGTTGAAGCGATGCGCCATGGTGCTCAAGACTTTTTGATTAAGCCTTGTGAGGCGGATCGCTTGCGGGTCAC
GGTGAATAACGCGATCCGTAAAGCATCGAAACTCAAAAATGATGTCGATAATAAAAATCAGAACTATCAAGGCTTTATCG
GTAGTAGCCAAACCATGCAGGCGGTGTACCGCACCATTGACTCTGCGGCGAGCAGCAAAGCCAGTATTTTTATTACCGGT
GAAAGTGGTACAGGTAAAGAGGTGTGTGCCGAAGCGATTCACGCTGCGAGCAAGCGTGGAGATAAACCGTTTATTGCCAT
TAACTGTGCTGCGATCCCGAAAGATCTGATTGAAAGTGAGTTGTTCGGCCACGTAAAAGGGGCTTTTACCGGTGCGGCGA
CTGAACGCCAAGGTGCTGCGGAAGCCGCTGATGGTGGCACGCTATTTTTGGATGAGTTGTGCGAAATGGATTTGGATTTA
CAGACCAAACTGCTGCGCTTTATCCAAACCGGAACATTCCAAAAAGTTGGTTCATCGAAAATGAAAAGCGTGGATGTGCG
CTTTGTGTGTGCGACCAACCGTGACCCCTGGAAAGAAGTGCAAGAAGGGCGTTTTCGTGAGGACTTGTACTACCGCTTGT
ATGTGATCCCACTGCACTTACCACCATTGCGCGAGCGTGGTGATGATGTGATAGAGATTGCCTACTCGCTGCTTGGCTTT
ATGTCCAAGGAAGAAGGGAAAGATTTTGTACGCTTGTCGGCCGAAGTGGTCGAGCGCTTCCGTCACTACGAGTGGCCGGG
TAACGTGCGTCAATTACAAAACGTTTTACGTAATGTCGTGGTACTGAATGAAGGCCGTGAAATCACGTTAGATATGCTCC
CGCCACCACTAAACCAAATGCCAACTCCGATCAATCGAGCTTTACCGCTCGCCCATGAAAACAAAGTGTCAGTGCATGAA
ATTTTCCCATTGTGGATGACGGAAAAACAGGCCATCGAGCAAGCCATTGAAGCGTGTGATGGTAACATCCCCCGCGCTGC
GACCTATCTGGATGTCAGTCCTTCAACCATTTATCGCAAGCTGCAAGCTTGGAATGAAAAAGTTCAAGAAAAAGAGAAGG
AGCGGTAA

Domains

Predicted by InterproScan.

Response regulator receiver domain (Response_reg)

(2-108)

Sigma-54 interaction domain (Sigma54_activat)

(133-298)

Bacterial regulatory protein, Fis family (HTH_8)

(404-444)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  luxO Vibrio cholerae strain A1552

98.242

100

0.982
  pilR Pseudomonas aeruginosa PAK

38.274

99.341

0.38