Detailed information    

insolico Bioinformatically predicted

Overview


Name   rexA   Type   Machinery gene
Locus tag   V6U62_RS01645 Genome accession   NZ_CP145860
Coordinates   307165..310818 (+) Length   1217 a.a.
NCBI ID   WP_272160341.1    Uniprot ID   -
Organism   Streptococcus salivarius strain KSS2     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context


Location: 302165..315818
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  V6U62_RS01635 (V6U62_01630) - 302233..303606 (+) 1374 WP_410535025.1 GHKL domain-containing protein -
  V6U62_RS01640 (V6U62_01635) rexB 303855..307175 (+) 3321 WP_049545912.1 ATP-dependent nuclease subunit B Machinery gene
  V6U62_RS01645 (V6U62_01640) rexA 307165..310818 (+) 3654 WP_272160341.1 helicase-exonuclease AddAB subunit AddA Machinery gene
  V6U62_RS01650 (V6U62_01645) - 311170..311901 (-) 732 WP_002891763.1 DUF554 domain-containing protein -
  V6U62_RS01655 (V6U62_01650) - 312176..312907 (+) 732 WP_410535023.1 ABC transporter ATP-binding protein -
  V6U62_RS01660 (V6U62_01655) - 312910..314499 (+) 1590 WP_410535021.1 ABC transporter permease -
  V6U62_RS01665 (V6U62_01660) proB 314619..315422 (+) 804 WP_410535019.1 glutamate 5-kinase -

Sequence


Protein


Download         Length: 1217 a.a.        Molecular weight: 138129.38 Da        Isoelectric Point: 4.7913

>NTDB_id=853142 V6U62_RS01645 WP_272160341.1 307165..310818(+) (rexA) [Streptococcus salivarius strain KSS2]
MLTKAFLSPTEIKERIDQEAASDKERKLTPEQIEAIYSNGSNILVSASAGSGKTFVMVERILDMIGRGVGIDQLFISTFT
VKAAGELKERLEKRLTEQLGQVETDEERAFLSDQIAKIGTADIGTMDAFTQKLVNQYGYLLGVSPIFRIMTDPAEQTLMK
NEVYTDLFNDYMQAKDAQLFQKLVRNFAGNGKTSKAFRDLVYDVYNFSQATAGPEKWLRQNLLKGQTDAKPDKAKVELLE
GLKDGLLADFLAFLRDHLGLAQREFAKAKYLNNVSDAISLLEGALANDQTDMEDLLKQLLTLSGGTGLTNMTRPKDEELK
AYKEAYNKTKNEFVAQLREIDTQLTVLEVLTKHNDDILPLLELLQAFVLDFSDQYLQAKIQENAFEFSDIAHFAIRILEE
NPEVAASYRDRYHEVMVDEYQDNSHTQERMLELLSNGHNRFMVGDIKQSIYRFRQADPQIFNGKFQLFLENPDAGKLILL
KENFRSQSEVLDATNGVFSHLMDQEIGDILYDKTHMLVAGSEKQKEPHPENETEVLIYNSDEASVTPDEEGSDQPISSGE
ISLVIKEIISLHKQGVRFEDITLLAPTRNTYLDLMASFEEHGIPLVPDEYKSSYLESLEVMIMLDTLRAINNPLNDYALV
ALLRSPMFNFNEDDLARIAVQADEGQFYDKLLVACTKTGLHPEVVTQGLDAKLTLFTKTLADWRDYSKWHSLYDLIWKIY
DDRFYYDYVGSLPRAEQRQANLYALALRANAYEKTGFKGLSRFIGMIDKIISSGNDLEEVTDLVPKNAVSLMTIHKSKGL
EFKYVFVLQMNRKFIGHSRDGLSGKYIINREKGLGIKYLADLKDQINTNLPKLNVVLETLTFQENRREERRASISEEMRL
LYVAMTRAEKKLYLVGKGSKEKLTQQFGTDVENNRLPVALRDQIATYQDWVMALDTAFMRKDLKFTVRFVEAEELTPEAI
GQVQVKAAVNADDLSNNRQTEDIKRALTVLESVEKLNQLYAPAIDLPSVRTPSQLKAFYEPVMDTEGVDIMDKKEEVQPL
ETTASFELPNFGQKPKVTGAAVGSATHELMQRLILSDTVTLQDLTQALSRVSADDQVKSRVQLEKLLGFFDTELGKLILA
NRGKLRREAPFAMLAEDPASKEDFVVRGIIDGYLLLEDRIVLFDYKTDRFTHPSELKERYKGQMSLYAKALSQAYQIDKI
DKYLILLGGKDLEVVEV

Nucleotide


Download         Length: 3654 bp        

>NTDB_id=853142 V6U62_RS01645 WP_272160341.1 307165..310818(+) (rexA) [Streptococcus salivarius strain KSS2]
ATGTTGACTAAAGCTTTTTTAAGTCCAACAGAGATTAAGGAACGTATTGACCAAGAAGCAGCTTCTGACAAGGAACGCAA
GTTAACACCTGAGCAGATTGAGGCCATTTACAGTAATGGTAGTAATATTCTTGTGTCAGCTTCGGCTGGATCAGGAAAAA
CCTTTGTCATGGTTGAGCGTATACTTGATATGATTGGACGTGGCGTTGGCATTGACCAACTCTTTATCTCAACCTTTACG
GTAAAGGCCGCGGGTGAGTTAAAAGAGCGTCTGGAAAAGCGTCTGACAGAGCAACTTGGACAAGTTGAGACGGATGAAGA
GCGTGCCTTTCTTTCAGATCAGATTGCCAAGATTGGGACGGCAGATATTGGAACCATGGATGCCTTTACCCAGAAATTGG
TCAATCAGTATGGCTATCTCTTGGGGGTGTCACCTATTTTCCGCATTATGACAGATCCTGCCGAGCAGACACTTATGAAA
AATGAGGTTTATACCGATCTTTTCAATGATTACATGCAAGCCAAGGATGCCCAGCTTTTCCAAAAATTGGTCCGCAACTT
CGCTGGAAATGGTAAGACTAGTAAGGCCTTCCGTGATCTAGTTTACGATGTCTATAACTTTTCTCAGGCTACTGCAGGTC
CTGAAAAATGGCTACGTCAGAATCTCTTAAAAGGGCAGACCGATGCCAAGCCAGACAAGGCTAAAGTTGAGCTTTTAGAG
GGTCTCAAAGATGGCTTGTTGGCTGATTTCTTAGCCTTCTTAAGAGACCATTTAGGCTTAGCTCAGCGTGAATTTGCCAA
GGCCAAGTATCTGAATAATGTGTCAGATGCCATTAGCCTTCTGGAGGGAGCCTTGGCCAATGACCAAACCGATATGGAGG
ACTTGCTCAAACAACTCTTGACTCTGTCAGGAGGGACTGGCTTGACAAATATGACCCGTCCTAAAGACGAGGAACTCAAG
GCCTACAAGGAAGCTTACAACAAGACCAAAAATGAGTTTGTGGCCCAGTTGCGTGAGATTGATACCCAACTAACGGTCCT
CGAGGTTTTGACCAAGCATAATGATGACATCCTACCTCTGTTAGAGCTGCTTCAGGCCTTTGTGCTTGATTTTTCAGACC
AGTATTTACAGGCCAAGATTCAGGAAAATGCCTTTGAATTCTCAGATATTGCTCACTTCGCCATCCGTATTTTGGAGGAA
AATCCAGAGGTGGCAGCCAGCTACCGTGACCGTTACCATGAAGTAATGGTAGACGAGTATCAAGACAATAGCCATACCCA
AGAACGCATGTTGGAGCTCCTCTCTAACGGTCACAACCGATTCATGGTGGGAGATATCAAGCAATCTATCTATCGTTTCC
GTCAGGCAGACCCTCAGATTTTTAATGGCAAGTTCCAGCTCTTCCTTGAAAATCCAGATGCAGGTAAGCTGATTCTCCTT
AAAGAGAACTTCCGTAGCCAATCTGAGGTTCTTGATGCGACTAATGGTGTTTTCAGCCACCTCATGGATCAGGAAATCGG
AGATATCCTTTATGACAAGACACATATGTTGGTAGCCGGTAGCGAGAAGCAAAAAGAGCCCCATCCTGAAAATGAGACTG
AGGTTCTGATTTACAATAGTGATGAAGCAAGTGTGACTCCTGACGAGGAAGGTTCTGATCAACCTATCAGTAGTGGTGAG
ATTTCCTTGGTTATCAAAGAAATTATCAGTCTTCATAAGCAGGGTGTACGTTTTGAGGACATTACCCTCCTAGCACCAAC
CCGCAACACCTATCTGGACTTGATGGCAAGCTTCGAGGAGCACGGAATTCCTTTGGTTCCTGACGAGTACAAGTCAAGCT
ACCTAGAGTCGCTAGAAGTTATGATTATGTTGGATACCCTTCGTGCCATCAATAATCCTCTTAATGACTATGCCCTCGTT
GCCCTCCTTCGTTCACCGATGTTTAATTTCAATGAGGATGATTTGGCTCGTATTGCTGTCCAGGCTGACGAAGGACAATT
CTATGATAAGCTTCTTGTAGCATGCACTAAAACAGGGCTTCATCCGGAAGTTGTCACACAAGGACTTGATGCCAAGTTGA
CTCTTTTCACTAAGACTCTGGCAGATTGGCGTGATTACAGTAAGTGGCACTCGCTCTACGACCTCATTTGGAAGATTTAC
GACGATCGTTTCTATTATGATTATGTTGGCAGTCTTCCACGAGCTGAGCAACGTCAGGCCAATCTCTACGCCCTTGCCTT
GCGTGCCAATGCCTATGAAAAGACAGGTTTTAAGGGACTTTCTCGTTTTATTGGTATGATTGATAAGATCATTTCTAGCG
GTAACGACCTAGAGGAAGTGACAGACTTGGTTCCTAAAAATGCTGTTAGCCTTATGACGATTCACAAGTCCAAGGGGCTA
GAATTCAAGTATGTTTTTGTCTTGCAGATGAATCGTAAGTTCATTGGTCACAGTAGGGATGGACTAAGTGGTAAGTATAT
TATCAACCGTGAAAAAGGGCTTGGCATTAAGTACCTAGCTGACCTTAAAGATCAGATAAACACCAATTTGCCCAAGTTAA
ATGTTGTTCTAGAGACCTTAACCTTCCAGGAAAATCGTAGGGAAGAGCGCAGGGCAAGTATCTCAGAAGAGATGCGTCTG
CTCTATGTTGCAATGACTCGTGCAGAGAAAAAACTCTACCTAGTTGGTAAGGGTAGTAAGGAAAAATTAACCCAGCAATT
TGGTACGGATGTCGAAAATAATCGCCTACCAGTAGCTCTACGTGACCAAATCGCTACTTATCAGGATTGGGTTATGGCTT
TGGATACCGCCTTTATGAGAAAGGATCTCAAGTTTACTGTTCGCTTTGTTGAGGCTGAGGAGTTGACGCCAGAGGCTATT
GGTCAGGTTCAAGTCAAGGCGGCAGTAAATGCTGATGATTTATCTAACAATCGCCAGACGGAAGACATTAAGCGTGCTCT
AACTGTCTTAGAAAGTGTTGAAAAACTCAACCAGCTTTATGCACCAGCGATTGACCTACCATCTGTGCGTACGCCGAGCC
AGCTCAAAGCCTTCTACGAACCTGTTATGGATACCGAAGGGGTGGATATTATGGATAAGAAAGAGGAAGTGCAACCTCTT
GAGACTACCGCTAGCTTTGAGCTTCCAAATTTTGGGCAAAAACCTAAGGTCACTGGAGCTGCAGTTGGTTCTGCTACCCA
TGAACTCATGCAACGCTTGATTCTTTCTGATACTGTGACCCTCCAAGATTTAACACAGGCATTGAGTCGGGTATCGGCAG
ATGATCAAGTTAAGTCGCGTGTGCAGTTAGAAAAGCTACTAGGCTTCTTTGACACCGAACTTGGGAAGCTCATTCTAGCT
AACCGTGGTAAGTTGCGTCGGGAAGCACCATTTGCTATGTTGGCAGAAGATCCCGCTAGTAAAGAAGATTTTGTCGTCCG
TGGTATCATCGATGGCTACCTTCTTCTTGAAGACCGTATTGTCCTCTTTGACTATAAGACGGACCGCTTCACTCATCCTA
GTGAACTTAAGGAACGTTACAAAGGTCAAATGAGCCTCTATGCTAAAGCACTCAGCCAAGCCTATCAAATAGATAAGATT
GATAAATACCTTATTCTCCTAGGTGGAAAAGACTTGGAAGTCGTAGAAGTATAA


Secondary structure


Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure


Source ID Structure

Transmembrane helices


Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.



Visualization of predicted probability:


Similar proteins


Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rexA Streptococcus pneumoniae R6

50.694

100

0.51