Detailed information    

insolico Bioinformatically predicted

Overview

Name   rexB   Type   Machinery gene
Locus tag   V6U62_RS01640 Genome accession   NZ_CP145860
Coordinates   303855..307175 (+) Length   1106 a.a.
NCBI ID   WP_049545912.1    Uniprot ID   -
Organism   Streptococcus salivarius strain KSS2     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 298855..312175
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  V6U62_RS01625 (V6U62_01620) - 298865..300607 (+) 1743 WP_195187437.1 DUF6287 domain-containing protein -
  V6U62_RS01630 (V6U62_01625) - 300888..302198 (+) 1311 WP_410535027.1 sensor histidine kinase -
  V6U62_RS01635 (V6U62_01630) - 302233..303606 (+) 1374 WP_410535025.1 GHKL domain-containing protein -
  V6U62_RS01640 (V6U62_01635) rexB 303855..307175 (+) 3321 WP_049545912.1 ATP-dependent nuclease subunit B Machinery gene
  V6U62_RS01645 (V6U62_01640) rexA 307165..310818 (+) 3654 WP_272160341.1 helicase-exonuclease AddAB subunit AddA Machinery gene
  V6U62_RS01650 (V6U62_01645) - 311170..311901 (-) 732 WP_002891763.1 DUF554 domain-containing protein -

Sequence

Protein


Download         Length: 1106 a.a.        Molecular weight: 125958.16 Da        Isoelectric Point: 4.8179

>NTDB_id=853141 V6U62_RS01640 WP_049545912.1 303855..307175(+) (rexB) [Streptococcus salivarius strain KSS2]
MKLLYTDMSQDLTEILTEQATSYAQKGKRVFYIAPNALSFEKERKVLEYLPQSASFEITVTRFTQMARYFILNTSNPKTQ
LDDTGLAMIFYKVLSHMGDDELKVYGRLRKDSNFINQLVDLYKELQQANMTVLDLQHLDQAEKQENLVRIFSAAQDLLLA
GDFDNQSKLSAFFKEIASGHLDKALSNTVLVIDGFTRFSAEEEALVTLLNDKCHQIVIGTYASQKAYRANFVYGNVYQAS
VDFLRTLAQTYKVTPDYVTTDKEGNPSFARISRLLESRHDFSTVDEQLTAQDKQALQVWEVVNQKEEVAQVAKSIRQLLA
DGKRYKDILVLLGDEESYKLQVGQIFRKFDIPYYFGKEETMSSHPLVQFVDSLERIKRYNYRAEDLLNLVKSGLYGGFAQ
EDLDLFEYYVNFADIKGRHKFLSDFTANSRDKYDLDQLNTLRSQLVEPLDKLLNSRKQKGSSLLKKLVVFLEAVQVPSQM
ASLTAKASEAEKEQNEQVWKAFTQLLEQVETIFGEETLSVDDFLSILRSGMLACDYRTVPATVDVVNVKKYDLIQPHSAP
YVFALGMTQSHFPKVGQNKSLLSDEERSRINEATDEHRSLDIVTQSNSQRGHFVAMSLFNAASEQLVLSQPQILNETQDD
MSVYLKELLDLGLPLVEKGRNRFEAKGDQIGNYKDLLSTVIALNSSHLDADLDKETQTFWSVAVRYLRKRLDKDQVLIPN
VIDDVTTTKVDDQVMQLVFPGEEPLKLSASALTTFYNNQYLYFLRYVLGLEELESIHPDARHHGTYLHRVFERVMGDSSS
ENFDDKLEKAIAQTNQEQPFELLYTEDQESRLSRQILEDIARSTASVLRDNAAVKVEREEAKFDLLLANSIKITGIIDRV
DRLTDGALGVVDYKSGKNVFDIQKFYNGLSPQLVTYLEALRQTYKVDADQLFGAMYLHMQDPQLNLAQFGLDKLAAQAHK
ELTYKGLFVASETEHLAGGNYDLQKTVTYDKEDLETLLDYNIKLFTSAAEVIRSGNFAVNPYTEDGKSVQGDQIKAITHF
EADRHMGQARKLLRLPSKGKKEAYLELMAKDEDDNEMQVAETIVPFPVTDQAVTADNKDQEDNHVD

Nucleotide


Download         Length: 3321 bp        

>NTDB_id=853141 V6U62_RS01640 WP_049545912.1 303855..307175(+) (rexB) [Streptococcus salivarius strain KSS2]
ATGAAATTACTTTATACGGATATGTCTCAGGATTTAACAGAAATTCTGACGGAGCAGGCAACCAGCTATGCTCAAAAGGG
AAAGAGGGTCTTTTATATTGCCCCTAATGCCCTGTCATTTGAGAAGGAGCGTAAGGTCTTGGAATACCTGCCTCAGTCAG
CATCCTTTGAGATTACGGTGACTCGTTTTACTCAGATGGCGAGATACTTTATTCTCAATACGAGCAACCCCAAAACGCAG
CTGGATGATACTGGTCTGGCCATGATTTTTTATAAGGTGTTGTCGCATATGGGCGATGATGAGCTCAAGGTTTATGGCCG
TTTGCGCAAGGATAGTAACTTTATTAATCAATTGGTAGACCTTTACAAAGAGTTGCAGCAGGCTAATATGACGGTTCTGG
ATTTGCAGCATTTGGATCAGGCAGAGAAACAAGAGAATTTGGTAAGGATTTTCAGTGCGGCTCAAGACCTCTTGTTGGCA
GGAGATTTTGACAATCAATCAAAACTCAGTGCCTTCTTCAAAGAGATTGCCTCAGGACATCTGGATAAGGCTCTAAGTAA
TACGGTTCTGGTCATTGATGGCTTTACGCGTTTCTCAGCTGAAGAGGAGGCTTTGGTTACCCTCTTAAATGATAAGTGCC
ACCAGATTGTCATTGGAACTTATGCCAGTCAAAAGGCTTATAGGGCTAATTTTGTCTATGGCAATGTTTATCAAGCTTCA
GTGGATTTTCTGAGAACTCTGGCTCAGACTTATAAGGTGACACCTGACTACGTGACGACAGACAAAGAGGGCAATCCTTC
TTTTGCACGTATTAGCCGTCTTTTGGAAAGCCGTCATGATTTTAGTACGGTAGATGAGCAGCTGACTGCTCAGGACAAGC
AAGCCTTGCAGGTCTGGGAAGTGGTCAACCAAAAGGAAGAGGTGGCTCAGGTTGCCAAGAGTATTCGTCAGTTGCTGGCG
GATGGCAAGCGCTACAAGGATATTTTGGTCTTGCTAGGTGATGAGGAGAGTTATAAGCTTCAGGTGGGGCAGATTTTCCG
AAAATTTGATATTCCCTATTATTTCGGGAAGGAAGAAACCATGTCTAGCCACCCTTTGGTGCAGTTTGTGGATTCGCTGG
AACGTATCAAGCGCTATAATTACCGTGCCGAGGATTTGCTTAATCTCGTAAAATCCGGTCTCTATGGTGGTTTTGCTCAA
GAGGATTTAGACCTTTTTGAATATTATGTCAATTTTGCAGATATCAAGGGGCGTCACAAGTTCCTTTCTGATTTCACGGC
TAATAGTCGTGATAAGTATGATTTGGATCAGCTCAATACCTTGAGATCACAACTGGTAGAGCCCTTGGACAAGTTGCTTA
ACAGTCGCAAACAGAAGGGGTCTAGTCTGCTCAAGAAACTTGTGGTCTTTTTAGAGGCTGTGCAAGTGCCAAGTCAGATG
GCTAGTTTGACTGCCAAGGCCAGTGAAGCTGAAAAAGAGCAGAATGAACAGGTCTGGAAGGCCTTCACGCAACTCTTGGA
GCAGGTTGAGACAATCTTTGGGGAAGAAACACTTTCAGTGGATGACTTTTTGTCTATCTTGCGTTCGGGCATGTTGGCCT
GTGATTACCGTACGGTCCCAGCTACTGTTGATGTGGTCAATGTGAAGAAATACGATTTGATTCAACCACACTCTGCTCCT
TATGTTTTTGCCTTGGGCATGACCCAGTCACATTTTCCAAAGGTAGGGCAAAATAAGAGTCTCCTGTCTGACGAGGAACG
TAGTCGTATCAATGAAGCTACGGATGAACACCGGAGTTTGGATATTGTTACGCAGAGCAATAGTCAGCGGGGGCATTTTG
TGGCTATGTCACTTTTTAATGCAGCTAGTGAACAATTGGTGCTTAGTCAGCCACAAATTCTCAATGAGACTCAAGATGAC
ATGTCGGTTTATTTGAAGGAGCTGCTTGACCTTGGTCTTCCTTTGGTTGAAAAGGGACGTAATCGTTTCGAGGCTAAGGG
TGACCAGATTGGGAACTACAAGGACCTTCTATCAACTGTCATCGCCCTTAACAGTAGCCATCTAGATGCTGATTTGGACA
AGGAAACGCAGACTTTCTGGTCAGTTGCGGTGCGTTATCTCCGTAAGCGACTTGATAAGGACCAAGTCTTGATTCCAAAT
GTGATTGACGATGTGACGACGACCAAGGTTGATGATCAGGTCATGCAGCTGGTCTTTCCGGGGGAAGAACCACTGAAATT
ATCAGCCTCGGCTCTGACGACCTTCTATAACAACCAATATCTTTATTTCTTGCGTTATGTTTTGGGGCTTGAAGAGTTGG
AGTCCATCCATCCAGATGCTCGACACCATGGGACTTACTTGCACCGTGTCTTTGAGCGTGTCATGGGTGATTCTTCGTCA
GAAAACTTCGATGATAAATTGGAAAAGGCTATTGCTCAGACCAATCAGGAACAACCCTTTGAACTTCTCTATACAGAGGA
CCAAGAGAGTCGCTTATCTCGTCAGATTTTAGAAGATATCGCCCGATCAACTGCCAGTGTTTTGCGTGATAATGCGGCTG
TTAAGGTTGAGCGTGAGGAAGCCAAGTTTGACTTGCTTTTAGCAAATAGCATCAAGATTACAGGGATTATTGACCGTGTG
GACCGTTTAACGGATGGGGCTCTGGGTGTCGTTGACTACAAATCAGGTAAAAATGTCTTTGACATTCAGAAATTCTACAA
TGGTCTCAGTCCGCAATTGGTAACCTATCTAGAAGCTCTTCGCCAGACCTATAAGGTTGATGCTGATCAGCTTTTTGGTG
CCATGTATCTTCACATGCAGGACCCACAGCTTAACCTAGCTCAGTTTGGTCTGGATAAGTTAGCAGCTCAGGCTCATAAG
GAATTGACCTATAAGGGACTTTTTGTGGCTTCAGAAACGGAGCATCTGGCTGGTGGAAACTATGATTTACAAAAGACTGT
CACCTATGATAAGGAGGACCTAGAAACCTTGCTTGATTACAATATTAAGCTGTTTACAAGTGCTGCTGAAGTTATTCGAA
GCGGGAATTTTGCGGTTAATCCTTATACTGAGGATGGCAAGTCTGTCCAAGGAGATCAAATCAAGGCTATTACTCATTTT
GAAGCCGACCGCCACATGGGACAGGCTCGAAAACTCTTGCGTTTACCAAGTAAGGGCAAGAAGGAAGCCTATTTGGAGCT
GATGGCAAAAGATGAGGACGATAATGAGATGCAAGTTGCTGAAACTATCGTCCCCTTTCCAGTCACTGATCAAGCTGTGA
CAGCAGACAACAAAGACCAGGAGGACAACCATGTTGACTAA

Domains

Predicted by InterProScan.

PD-(D/E)XK nuclease superfamily (PDDEXK_1)

(747-1023)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rexB Streptococcus pneumoniae R6

43.618

98.463

0.429