Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilC   Type   Machinery gene
Locus tag   QYS50_RS01970 Genome accession   NZ_CP129415
Coordinates   406868..408088 (-) Length   406 a.a.
NCBI ID   WP_407570324.1    Uniprot ID   -
Organism   Deinococcus altitudinis strain LMG 24022     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 401868..413088
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QYS50_RS01965 (QYS50_01965) - 403138..406533 (-) 3396 WP_407570323.1 EAL domain-containing protein -
  QYS50_RS01970 (QYS50_01970) pilC 406868..408088 (-) 1221 WP_407570324.1 type II secretion system F family protein Machinery gene
  QYS50_RS01975 (QYS50_01975) - 408293..409006 (+) 714 WP_407570325.1 L-threonylcarbamoyladenylate synthase -
  QYS50_RS01980 (QYS50_01980) - 409207..409716 (+) 510 WP_407571317.1 SMC-Scp complex subunit ScpB -
  QYS50_RS01985 (QYS50_01985) - 409903..410673 (+) 771 WP_407570326.1 DUF4388 domain-containing protein -
  QYS50_RS01990 (QYS50_01990) gatA 410757..412271 (+) 1515 WP_407570327.1 Asp-tRNA(Asn)/Glu-tRNA(Gln) amidotransferase subunit GatA -

Sequence

Protein


Download         Length: 406 a.a.        Molecular weight: 44352.32 Da        Isoelectric Point: 9.7779

>NTDB_id=853110 QYS50_RS01970 WP_407570324.1 406868..408088(-) (pilC) [Deinococcus altitudinis strain LMG 24022]
MAVFEYRVRDRAGKIMTSQLEADSLAQVRDNLRSKGLLIVDIKPARTGLNGDIKIPFLTDRPPGLKQVALFSKQMATLIN
AGVPLVQSLAIMQRQLEDKSFQNILKVVRTDVESGTPLSDAILKHPKVFDRLYINLVRAGETSGTLDAIMGRISDFQEKE
LALRGKIKSALTYPVIVLVFALGITYFLLTTIVPQFALILTSLGAPLPPLTRFLIAVSNFLQHQTLIFAAIIGAGVYLYR
RYYATPKGRYQIDRIKLKAPVLGTLLRRSAIASFARTFGLLLASGVNIIESLEITKGTADNALIEEAIENARNVVMVGEP
MSGSLASSKMFPPMVVSMVSIGEETGALDSMLNKVADFYEREVDEAVDSMTAAIEPIMIVFLGTIVGLIVAGMFLPMFAI
IGQLSK

Nucleotide


Download         Length: 1221 bp        

>NTDB_id=853110 QYS50_RS01970 WP_407570324.1 406868..408088(-) (pilC) [Deinococcus altitudinis strain LMG 24022]
ATGGCCGTTTTTGAATACCGTGTCCGTGACCGCGCCGGGAAGATCATGACCTCCCAGCTTGAGGCAGACAGTCTGGCACA
GGTGCGTGACAATCTGCGCTCCAAAGGCCTGCTGATCGTCGACATCAAACCGGCCCGGACCGGCCTGAACGGCGACATCA
AGATTCCGTTCCTGACCGACCGCCCACCCGGCCTGAAGCAGGTGGCGCTGTTTTCCAAGCAGATGGCGACCCTGATCAAC
GCGGGTGTGCCGCTGGTGCAGTCGCTGGCGATCATGCAGCGGCAGCTGGAAGACAAGTCGTTTCAGAATATCCTGAAGGT
GGTCAGAACCGACGTCGAATCGGGCACGCCGCTTTCGGACGCGATTCTCAAGCACCCCAAGGTCTTCGACCGGCTGTACA
TCAACCTGGTGCGGGCGGGCGAAACCTCGGGCACGCTCGACGCCATCATGGGCCGCATCAGCGACTTCCAGGAAAAGGAA
CTGGCGCTGCGCGGCAAGATCAAGAGTGCGCTGACCTACCCGGTGATCGTGCTGGTGTTCGCCCTGGGCATCACCTACTT
CCTGCTGACCACCATCGTGCCGCAGTTCGCCCTGATTCTCACCTCGCTGGGCGCGCCGCTTCCTCCCCTGACCCGCTTCC
TGATCGCGGTTTCCAACTTCCTGCAGCACCAGACCCTGATCTTCGCGGCGATCATCGGGGCCGGCGTGTACTTGTACCGG
CGCTACTACGCCACGCCCAAGGGCCGGTACCAGATCGACCGGATCAAGCTGAAAGCTCCGGTGCTGGGCACCCTGCTGCG
GCGCAGCGCCATCGCCTCGTTCGCCCGCACCTTTGGTCTGCTGCTCGCCAGCGGCGTGAACATCATCGAGAGCCTGGAGA
TCACCAAGGGCACCGCCGACAACGCCCTGATTGAAGAGGCCATCGAGAACGCCCGCAACGTGGTGATGGTCGGTGAACCG
ATGAGCGGCTCACTGGCAAGCAGCAAGATGTTTCCGCCGATGGTGGTGTCGATGGTATCGATCGGCGAGGAAACCGGCGC
GCTCGACAGCATGCTAAATAAGGTGGCCGACTTCTACGAGCGCGAGGTCGACGAGGCCGTGGACAGCATGACGGCGGCCA
TCGAACCGATCATGATCGTCTTTCTGGGCACCATCGTGGGCCTGATCGTGGCCGGGATGTTCCTGCCGATGTTCGCCATC
ATCGGTCAGCTGAGCAAGTAG

Domains

Predicted by InterproScan.

Type II secretion system (T2SS), protein F (T2SSF)

(71-194)

Type II secretion system (T2SS), protein F (T2SSF)

(274-396)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilC Thermus thermophilus HB27

58.867

100

0.589
  pilC Legionella pneumophila strain ERS1305867

37.469

99.261

0.372