Detailed information NTG0853071

Bioinformatically predicted

Overview

• Name: scnR
• Type: Regulator
• Locus tag: V6T26_RS05935
• Genome accession: NZ_CP145858
• Coordinates: 1313909..1314616 (+)
• Length: 235 a.a.
• NCBI ID: WP_270536929.1
• Uniprot ID: -
• Organism: Streptococcus salivarius strain KSS11
• Function: regulate comX expression (predicted from homology) Competence regulation

Genomic Context

Location: 1308909..1319616

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
V6T26_RS05905 (V6T26_05905)	-	1309085..1309768 (+)	684	WP_073950522.1	DUF4956 domain-containing protein	-
V6T26_RS05910 (V6T26_05910)	-	1309904..1310119 (-)	216	WP_410541074.1	hypothetical protein	-
V6T26_RS05915 (V6T26_05915)	-	1310708..1311442 (-)	735	WP_293927447.1	ABC transporter permease	-
V6T26_RS05920 (V6T26_05920)	-	1311444..1312187 (-)	744	WP_410541076.1	ABC transporter permease	-
V6T26_RS05925 (V6T26_05925)	-	1312189..1313097 (-)	909	WP_410541077.1	ABC transporter ATP-binding protein	-
V6T26_RS05930 (V6T26_05930)	-	1313211..1313594 (-)	384	Protein_1153	ATP-binding cassette domain-containing protein	-
V6T26_RS05935 (V6T26_05935)	scnR	1313909..1314616 (+)	708	WP_270536929.1	response regulator transcription factor	Regulator
V6T26_RS05940 (V6T26_05940)	-	1314627..1315982 (+)	1356	WP_410541078.1	sensor histidine kinase	-
V6T26_RS05945 (V6T26_05945)	hisE	1316113..1316427 (-)	315	WP_110980950.1	phosphoribosyl-ATP diphosphatase	-
V6T26_RS05950 (V6T26_05950)	hisI	1316436..1316774 (-)	339	WP_110980951.1	phosphoribosyl-AMP cyclohydrolase	-
V6T26_RS05955 (V6T26_05955)	hisF	1316771..1317529 (-)	759	WP_002890735.1	imidazole glycerol phosphate synthase subunit HisF	-
V6T26_RS05960 (V6T26_05960)	hisA	1317531..1318250 (-)	720	WP_410541079.1	1-(5-phosphoribosyl)-5-[(5- phosphoribosylamino)methylideneamino]imidazole-4- carboxamide isomerase	-
V6T26_RS05965 (V6T26_05965)	hisH	1318299..1318907 (-)	609	WP_049545184.1	imidazole glycerol phosphate synthase subunit HisH	-
V6T26_RS05970 (V6T26_05970)	hisB	1318904..1319488 (-)	585	WP_002888923.1	imidazoleglycerol-phosphate dehydratase HisB	-

Sequence

Protein

• Length: 235 a.a.
• Molecular weight: 26462.56 Da
• Isoelectric Point: 5.3800

>NTDB_id=853071 V6T26_RS05935 WP_270536929.1 1313909..1314616(+) (scnR) [Streptococcus salivarius strain KSS11]
MSFEIQLLNKHILIVDDDTALSESIKEVLVSRGFKNISRAYSISEGIDVVSTSHIDLIILDVMLPDGEGYLLSQYVRKNS
DIPILFLTAKNNPDDEIRGLDSGGDDYVTKPFLPKSLTYRIIALLRRAYKDESELIELTDCIIDLNNATVKKSGQNLSLT
PTEIQVLRKLYANKNYIVSTETICDTIWGLDSFGYEKSLMVHIRNIREKIELIPSKPSHLITVKGLGYKLVISTI

Nucleotide

• Length: 708 bp

>NTDB_id=853071 V6T26_RS05935 WP_270536929.1 1313909..1314616(+) (scnR) [Streptococcus salivarius strain KSS11]
ATGAGTTTTGAAATACAATTATTAAATAAACACATATTGATTGTGGATGATGACACAGCGTTAAGTGAATCAATTAAAGA
AGTACTTGTGAGTCGTGGTTTTAAAAACATTAGTCGTGCTTATAGTATTAGTGAAGGAATTGATGTTGTTTCAACGTCCC
ACATTGATTTAATTATTTTAGATGTAATGCTTCCAGACGGTGAAGGATATTTGCTCTCTCAATATGTGAGAAAAAACTCT
GATATTCCAATTCTATTTTTGACTGCTAAAAATAATCCTGACGACGAAATTAGGGGACTTGATTCGGGAGGAGATGACTA
CGTCACAAAGCCCTTCTTACCTAAATCTTTAACATATCGTATTATTGCACTATTAAGAAGGGCTTATAAAGATGAATCTG
AACTCATTGAACTAACCGACTGTATCATTGACTTGAACAATGCCACTGTTAAGAAAAGTGGGCAAAATCTATCGCTAACC
CCCACGGAAATCCAGGTTCTTCGAAAATTATATGCTAATAAAAACTACATTGTATCTACTGAAACAATTTGTGATACAAT
TTGGGGACTTGATAGTTTTGGATATGAGAAATCTCTAATGGTACATATTCGAAATATCCGAGAAAAGATAGAACTTATCC
CTTCTAAACCTAGTCACCTAATTACTGTCAAAGGACTTGGATATAAACTTGTTATTTCGACAATCTAA

Domains

Predicted by InterProScan.

• Response regulator receiver domain (Response_reg) (12-121)

• Transcriptional regulatory protein, C terminal (Trans_reg_C) (154-230)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
scnR	Streptococcus mutans UA159	42.411	95.319	0.404
vicR	Streptococcus mutans UA159	37.991	97.447	0.37