Detailed information NTG0853071

Bioinformatically predicted

Overview

• Name: pilD
• Type: Machinery gene
• Locus tag: QVN17_RS23750
• Genome accession: NZ_CP129403
• Coordinates: 4820897..4821697 (-)
• Length: 266 a.a.
• NCBI ID: WP_019705879.1
• Uniprot ID: -
• Organism: Klebsiella pneumoniae subsp. pneumoniae strain Kp3739_LBHALD
• Function: assembly of type IV pilus (predicted from homology) DNA binding and uptake

Genomic Context

Location: 4815897..4826697

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
QVN17_RS23730 (QVN17_23730)	dksA	4816477..4816932 (-)	456	WP_002888845.1	RNA polymerase-binding protein DksA	-
QVN17_RS23735 (QVN17_23735)	sfsA	4817095..4817811 (-)	717	WP_002888848.1	DNA/RNA nuclease SfsA	-
QVN17_RS23740 (QVN17_23740)	thpR	4817811..4818347 (-)	537	WP_004145901.1	RNA 2',3'-cyclic phosphodiesterase	-
QVN17_RS23745 (QVN17_23745)	hrpB	4818420..4820849 (+)	2430	WP_019705878.1	ATP-dependent helicase HrpB	-
QVN17_RS23750 (QVN17_23750)	pilD	4820897..4821697 (-)	801	WP_019705879.1	A24 family peptidase	Machinery gene
QVN17_RS23755 (QVN17_23755)	-	4821694..4822440 (-)	747	WP_004145897.1	type II secretion system protein N	-
QVN17_RS23760 (QVN17_23760)	-	4822430..4822915 (-)	486	WP_004183037.1	type II secretion system protein M	-
QVN17_RS23765 (QVN17_23765)	gspL	4822908..4824101 (-)	1194	WP_019705880.1	type II secretion system protein GspL	-
QVN17_RS23770 (QVN17_23770)	gspK	4824088..4825074 (-)	987	WP_004178610.1	type II secretion system minor pseudopilin GspK	-
QVN17_RS23775 (QVN17_23775)	gspJ	4825071..4825667 (-)	597	WP_019705881.1	type II secretion system minor pseudopilin GspJ	-
QVN17_RS23780 (QVN17_23780)	gspI	4825664..4826029 (-)	366	WP_117240598.1	type II secretion system minor pseudopilin GspI	-
QVN17_RS23785 (QVN17_23785)	gspH	4826026..4826541 (-)	516	WP_004151939.1	type II secretion system minor pseudopilin GspH	-

Sequence

Protein

• Length: 266 a.a.
• Molecular weight: 29435.04 Da
• Isoelectric Point: 8.8894

>NTDB_id=853071 QVN17_RS23750 WP_019705879.1 4820897..4821697(-) (pilD) [Klebsiella pneumoniae subsp. pneumoniae strain Kp3739_LBHALD]
MTTLAALSLHFPFVWYGFLLLFGLALGSFYNVVIYRLPRMLTQTADDERITLSTPGSSCPQCRQPISWRDNIPLLSFLWL
GRRARCCQAPIAWSYPLTELATGLLFILAGALLAPGLPLAGGLVLLSFLLILARIDARTQLLPDRLTLPLLWAGLLFNLN
EVYIALPDAVAGAMAGYLALWSVYWLFRLLTGKEALGYGDFKLLAALGAWCGWQVLPQVLLLASASGLVWTLLQRLWTRQ
SLQQPLAFGPWLALAGGSIFLWQQMV

Nucleotide

• Length: 801 bp

>NTDB_id=853071 QVN17_RS23750 WP_019705879.1 4820897..4821697(-) (pilD) [Klebsiella pneumoniae subsp. pneumoniae strain Kp3739_LBHALD]
ATGACGACACTAGCCGCGTTATCGCTGCACTTTCCCTTTGTCTGGTATGGCTTTCTACTGCTGTTCGGCCTGGCGCTGGG
CAGCTTTTACAATGTGGTGATCTATCGTCTGCCGCGCATGTTGACCCAGACCGCGGACGACGAGCGGATAACCCTCAGCA
CCCCGGGCTCTTCCTGCCCGCAGTGCCGCCAGCCGATCTCCTGGCGGGACAATATCCCGCTGCTCAGTTTCCTCTGGCTG
GGCCGTCGCGCCCGCTGCTGTCAGGCGCCCATCGCGTGGAGCTATCCGCTGACCGAGCTGGCCACCGGCCTGCTGTTTAT
CCTCGCCGGAGCTTTGCTGGCGCCGGGCCTGCCGCTGGCGGGAGGCCTGGTGCTGCTCTCGTTCCTGCTGATACTGGCGC
GGATTGACGCCCGGACCCAGCTGCTGCCCGATCGCCTGACTCTGCCCCTGCTGTGGGCCGGGCTGCTGTTCAATCTTAAC
GAGGTGTACATTGCCCTGCCGGATGCGGTCGCCGGGGCGATGGCCGGTTATCTGGCGCTGTGGTCGGTCTACTGGCTGTT
CCGCCTGCTGACCGGGAAAGAGGCGCTGGGCTATGGCGATTTTAAGCTGCTGGCGGCGCTGGGCGCTTGGTGCGGCTGGC
AGGTTCTGCCGCAGGTGCTGTTGCTCGCTTCGGCCAGCGGGCTGGTGTGGACCCTGCTGCAACGCCTGTGGACCCGGCAG
TCGCTGCAGCAGCCGCTGGCCTTCGGCCCCTGGCTGGCGCTGGCCGGCGGGAGTATTTTTCTCTGGCAGCAGATGGTCTA
G

Domains

Predicted by InterproScan.

• Bacterial Peptidase A24 N-terminal domain (A24_N_bact) (21-109)

• Type IV leader peptidase family (Peptidase_A24) (123-231)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
pilD	Vibrio cholerae strain A1552	49.434	99.624	0.492
pilD	Vibrio campbellii strain DS40M4	46.182	100	0.477
pilD	Acinetobacter nosocomialis M2	46.008	98.872	0.455
pilD	Acinetobacter baumannii D1279779	45.247	98.872	0.447
pilD	Neisseria gonorrhoeae MS11	43.295	98.12	0.425