Detailed information    

insolico Bioinformatically predicted

Overview


Name   rexA   Type   Machinery gene
Locus tag   V6T26_RS01590 Genome accession   NZ_CP145858
Coordinates   288503..292156 (+) Length   1217 a.a.
NCBI ID   WP_410541319.1    Uniprot ID   -
Organism   Streptococcus salivarius strain KSS11     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context


Location: 283503..297156
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  V6T26_RS01580 (V6T26_01580) - 283572..284945 (+) 1374 WP_070839219.1 GHKL domain-containing protein -
  V6T26_RS01585 (V6T26_01585) rexB 285193..288513 (+) 3321 WP_410541318.1 ATP-dependent nuclease subunit B Machinery gene
  V6T26_RS01590 (V6T26_01590) rexA 288503..292156 (+) 3654 WP_410541319.1 helicase-exonuclease AddAB subunit AddA Machinery gene
  V6T26_RS01595 (V6T26_01595) - 292510..293241 (-) 732 WP_227039365.1 DUF554 domain-containing protein -
  V6T26_RS01600 (V6T26_01600) - 293515..294246 (+) 732 WP_002891761.1 ABC transporter ATP-binding protein -
  V6T26_RS01605 (V6T26_01605) - 294249..295838 (+) 1590 WP_410541320.1 ABC transporter permease -
  V6T26_RS01610 (V6T26_01610) proB 295958..296761 (+) 804 WP_004183407.1 glutamate 5-kinase -

Sequence


Protein


Download         Length: 1217 a.a.        Molecular weight: 138249.48 Da        Isoelectric Point: 4.8267

>NTDB_id=853030 V6T26_RS01590 WP_410541319.1 288503..292156(+) (rexA) [Streptococcus salivarius strain KSS11]
MLTKAFLSPTEIKERIAQEAASDKERKLTPEQIEAIYSNGSNILVSASAGSGKTFVMVERILDMIGRGVGIDQLFISTFT
VKAAGELKERLEKRLTEQLGQVETDEERAFLSDQIAKIGTADIGTMDAFTQKLVNQYGYLLGVSPIFRIMTDPAEQTLMK
NEVYTDLFNDYMQAKDAQLFQKLVRNFAGNGKTSKAFRDLVYDVYNFSQATAGPEKWLRQNLLKGQTDAKPDKAKVELLE
GLKDGLLADFLAFLRDHLGLAQREFAKAKYLNNVSDAISLLEGALANDQTDMEDLLKQLLTLSGGTGLTNMTRPKDEELK
VYKETYNRNKNEFVAQLREIDTQLTVLEVLTKHNADILPLLELLQAFVLDFSDQYLQAKIQENAFEFSDIAHFAIRILED
NPEVAASYRDRYHEVMVDEYQDNSHTQERMLELLSNGHNRFMVGDIKQSIYRFRQADPQIFNGKFQLFLENPDAGKLILL
KENFRSQSEVLDATNGVFSHLMDQEIGDILYDKTHMLVAGSQKQKEPHPENETEVLIYNSDEASVTPDEEGADQPISSGE
ISLVIKEIIKLHEQGVRFEDITLLAPTRNTYLDLMASFEEHGIPLVPDEYKSSYLESLEVMIMLDTLRAINNPLNDYALV
ALLRSPMFNFNEDDLARIAVQADKGQFYDKLLASHTKSGLHPEVVTQGLDAKLTLFTETLADWRDYSKWHSLYDLIWKIY
DDRFYYDYVGSLPRAEQRQANLYALALRANAYEKTGFKGLSRFIGMIDKIISSGNDLEEVTDLVPKNAVSLMTIHKSKGL
EFKYVFVLQMNRKFIGHSRDGLSGKYIINREKGLGIKYLADLKDQINTNLPKLNVVLETLTFQENRREERRASISEEMRL
LYVAMTRAEKKLYLVGKGSKEKLTQQFGTDVENNRLPVALRDQIATYQDWVMALDTAFMRKDLKFTVRFVEAEELTPEAI
GQVEVQAAVNADDLSNNRQTEDIKRALTVLESVEKLNQLYTPAIDLPSVRTPSQLKAFYEPVMDTEGVDIMDKKEEVQPL
ETTTTFELPDFGQKTKVTGAAVGSATHELMQRLILSDKVTLQDLTQALSRVSADDQVKARVQLEKLLGFFDTELGKLILA
NRGKLRREAPFAMLAEDPASKEDFVVRGIIDGYLLLEDRIVLFDYKTDRFTHPSELKERYKGQMSLYAKALSQAYQIDKI
DKYLILLGGKNLEVVEV

Nucleotide


Download         Length: 3654 bp        

>NTDB_id=853030 V6T26_RS01590 WP_410541319.1 288503..292156(+) (rexA) [Streptococcus salivarius strain KSS11]
ATGTTGACTAAAGCTTTTTTAAGTCCAACAGAGATTAAGGAACGCATTGCCCAAGAAGCAGCTTCTGACAAGGAACGCAA
GTTAACACCTGAGCAGATTGAAGCCATTTACAGTAATGGTAGCAATATTCTTGTGTCAGCTTCGGCCGGATCAGGAAAAA
CCTTTGTCATGGTTGAGCGTATCCTTGATATGATTGGACGTGGCGTTGGTATTGACCAACTCTTTATCTCAACCTTTACG
GTAAAGGCTGCAGGTGAGTTAAAAGAGCGTCTGGAAAAGCGTCTGACAGAGCAGTTGGGACAAGTTGAGACAGATGAAGA
GCGTGCCTTTCTTTCAGACCAGATTGCCAAAATTGGGACAGCTGATATTGGAACCATGGATGCCTTCACCCAGAAATTGG
TCAATCAGTATGGCTACCTCCTGGGGGTGTCACCTATTTTTCGCATCATGACAGACCCTGCTGAGCAGACGCTTATGAAA
AATGAGGTTTATACCGATCTTTTCAATGATTACATGCAAGCCAAGGATGCCCAGCTTTTCCAAAAATTGGTCCGCAACTT
CGCTGGAAATGGTAAGACTAGTAAGGCCTTCCGTGATCTAGTTTACGATGTCTATAACTTTTCTCAGGCTACTGCAGGTC
CTGAAAAATGGCTACGTCAGAATCTCTTAAAAGGGCAGACGGATGCCAAGCCAGACAAGGCTAAAGTTGAGCTTTTAGAG
GGTCTCAAAGATGGCTTGTTGGCTGATTTCTTAGCCTTCTTAAGAGACCATCTAGGTCTAGCTCAGCGTGAATTTGCCAA
GGCCAAGTATCTGAATAATGTGTCAGATGCCATTAGCCTTCTGGAGGGAGCCTTGGCCAATGACCAAACCGATATGGAGG
ACTTGCTCAAACAACTCTTGACTCTGTCAGGAGGGACTGGCTTGACAAATATGACCCGTCCTAAAGACGAGGAACTCAAG
GTCTACAAGGAAACTTACAACAGGAACAAAAATGAGTTTGTAGCCCAGTTGCGTGAGATTGATACCCAACTAACGGTCCT
CGAGGTTTTGACCAAGCATAATGCTGATATCCTACCTCTGTTAGAGCTGCTTCAGGCCTTTGTTCTTGATTTTTCAGACC
AGTATTTACAGGCAAAGATTCAGGAAAATGCTTTTGAATTCTCAGATATTGCCCATTTTGCTATCCGTATTTTGGAGGAT
AATCCAGAGGTGGCAGCTAGCTACCGTGACCGTTACCATGAAGTGATGGTAGATGAGTATCAGGACAATAGCCATACCCA
AGAACGCATGTTGGAGCTCCTCTCTAATGGCCACAACCGATTCATGGTGGGAGATATCAAGCAATCCATCTATCGTTTCC
GTCAGGCAGACCCTCAGATTTTTAATGGCAAGTTCCAGCTTTTCCTTGAAAATCCAGATGCAGGTAAGCTGATTCTCCTT
AAAGAGAATTTTCGTAGTCAATCTGAAGTTCTTGATGCGACTAATGGTGTTTTCAGCCACCTCATGGACCAGGAAATCGG
GGATATCCTCTATGACAAGACTCACATGCTGGTAGCGGGTAGCCAGAAGCAAAAAGAACCCCATCCTGAAAATGAGACAG
AGGTTCTGATTTACAATAGTGATGAAGCGAGTGTGACTCCTGACGAAGAAGGTGCTGATCAACCTATTAGTAGCGGCGAG
ATTTCCTTGGTTATCAAAGAAATCATCAAACTTCACGAGCAGGGTGTACGTTTTGAGGATATTACCCTCCTAGCACCAAC
TCGCAACACCTATCTGGACTTGATGGCAAGCTTTGAGGAGCACGGAATTCCCTTGGTTCCTGATGAGTACAAGTCAAGCT
ACCTAGAGTCACTAGAAGTTATGATTATGTTGGACACCCTTCGTGCCATCAATAATCCTCTCAATGACTACGCCTTGGTT
GCCCTCCTTCGTTCACCTATGTTTAACTTCAACGAGGACGACCTGGCTCGGATTGCTGTTCAGGCTGACAAAGGACAATT
CTATGACAAGCTTCTTGCATCTCATACTAAATCAGGACTTCATCCAGAAGTTGTCACCCAAGGACTTGATGCCAAGTTGA
CTCTTTTCACTGAGACTCTGGCAGATTGGCGTGATTACAGTAAGTGGCACTCGCTCTACGACCTCATTTGGAAGATTTAC
GATGATCGTTTCTATTATGATTATGTTGGAAGTCTCCCTCGAGCTGAGCAACGTCAGGCCAATCTCTACGCCCTTGCCTT
GCGTGCTAATGCTTATGAAAAGACAGGCTTTAAGGGCCTTTCTCGTTTTATTGGTATGATTGATAAGATCATTTCTAGCG
GTAACGACCTAGAGGAAGTGACAGACTTGGTTCCTAAAAATGCCGTTAGCCTTATGACGATTCACAAGTCCAAGGGGCTA
GAATTCAAGTATGTTTTTGTCTTGCAGATGAATCGCAAGTTCATTGGTCATAGTAGGGATGGACTAAGTGGTAAGTATAT
TATCAACCGTGAAAAAGGACTTGGCATTAAGTACCTAGCTGACCTTAAAGACCAGATAAACACCAATTTGCCCAAGTTAA
ATGTTGTTCTAGAGACCTTAACCTTCCAGGAAAATCGTAGGGAAGAGCGTCGAGCAAGTATCTCAGAAGAGATGCGTCTG
CTCTATGTTGCAATGACACGTGCAGAGAAAAAACTCTACCTGGTTGGTAAGGGTAGTAAGGAAAAATTAACCCAGCAATT
TGGCACGGATGTCGAAAACAATCGCCTACCAGTAGCTCTACGTGACCAAATCGCTACTTATCAGGATTGGGTTATGGCTT
TGGATACCGCCTTTATGAGAAAGGATCTCAAGTTTACTGTTCGCTTTGTTGAGGCTGAGGAGTTGACGCCAGAGGCTATT
GGTCAGGTTGAAGTTCAAGCGGCAGTAAATGCTGATGATTTATCTAACAATCGCCAGACGGAAGACATTAAGCGTGCCCT
AACTGTCTTAGAAAGTGTTGAAAAACTTAACCAGCTTTATACACCAGCGATTGACCTACCATCTGTGCGTACGCCGAGCC
AGCTCAAAGCCTTCTACGAACCTGTTATGGATACCGAAGGGGTGGATATTATGGACAAGAAAGAGGAGGTGCAACCTCTT
GAGACTACCACTACCTTTGAGCTTCCAGACTTTGGGCAAAAAACTAAGGTCACTGGAGCTGCAGTTGGTTCAGCCACCCA
TGAACTCATGCAACGCTTGATTCTTTCTGACAAGGTGACCCTCCAAGATTTGACACAGGCCTTGAGTCGGGTATCGGCAG
ATGATCAAGTTAAGGCGCGTGTGCAGTTAGAAAAGCTACTAGGCTTCTTTGACACCGAACTTGGGAAGCTCATTCTAGCT
AATCGTGGTAAGTTGCGTCGTGAAGCACCATTTGCTATGTTGGCAGAAGATCCCGCTAGTAAAGAAGACTTTGTCGTCCG
TGGTATCATCGATGGCTACCTTCTTCTTGAAGACCGTATTGTCCTCTTTGACTATAAGACGGACCGCTTCACTCATCCTA
GTGAACTTAAGGAACGCTACAAAGGGCAAATGAGCCTCTATGCTAAAGCCCTCAGTCAAGCCTATCAAATAGATAAGATT
GATAAATACCTTATTCTCCTAGGTGGAAAAAACTTGGAAGTCGTAGAAGTATAA


Secondary structure


Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure


Source ID Structure

Transmembrane helices


Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.



Visualization of predicted probability:


Similar proteins


Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rexA Streptococcus pneumoniae R6

50.612

100

0.509