Detailed information    

insolico Bioinformatically predicted

Overview

Name   rexB   Type   Machinery gene
Locus tag   V6T26_RS01585 Genome accession   NZ_CP145858
Coordinates   285193..288513 (+) Length   1106 a.a.
NCBI ID   WP_410541318.1    Uniprot ID   -
Organism   Streptococcus salivarius strain KSS11     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 280193..293513
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  V6T26_RS01570 (V6T26_01570) - 280208..281947 (+) 1740 WP_410541317.1 DUF6287 domain-containing protein -
  V6T26_RS01575 (V6T26_01575) - 282226..283536 (+) 1311 WP_110981190.1 hypothetical protein -
  V6T26_RS01580 (V6T26_01580) - 283572..284945 (+) 1374 WP_070839219.1 GHKL domain-containing protein -
  V6T26_RS01585 (V6T26_01585) rexB 285193..288513 (+) 3321 WP_410541318.1 ATP-dependent nuclease subunit B Machinery gene
  V6T26_RS01590 (V6T26_01590) rexA 288503..292156 (+) 3654 WP_410541319.1 helicase-exonuclease AddAB subunit AddA Machinery gene
  V6T26_RS01595 (V6T26_01595) - 292510..293241 (-) 732 WP_227039365.1 DUF554 domain-containing protein -

Sequence

Protein


Download         Length: 1106 a.a.        Molecular weight: 126297.77 Da        Isoelectric Point: 4.8668

>NTDB_id=853029 V6T26_RS01585 WP_410541318.1 285193..288513(+) (rexB) [Streptococcus salivarius strain KSS11]
MKLLYTDMSQDLTEILTEQATSYAQKGKRVFYIAPNALSFEKERKVLDYLPQSASFEITVTRFTQMARYFILNTSNPKTQ
LDDTGLAMIFYKVLSHMDDDELKVYGRLRKDSNFINQLVDLYKELQQANMTVLDLQHLDQAEKQEDLVRIFSVAQNLLLA
GDFDNQSKLSAFFKEITSGHLDKALSNTVLVIDGFTRFSAEEEALVALLNDKCHQIVIGTYASQKAYKANFVYGNVYQAS
VDFLRTLAQTYKVTPDYVTTDKEGNPSFVRISRLLESRHDFSTVDEKVTDQDKQALQVWEVVNQKEEVAQVAKSIRQLLA
DGKRYKDILVLLGDEESYKLQVGQIFRKFDIPYYFGKEETMSSHPLVQFVDSLERIKRYNYRAEDLLNLVKSGLYGGFTQ
EDLDLFEYYVNFADIKGRHKFLSDFTANSRDKYDLDQLNALRSQLVEPLDKLLNSRKQKGSSLLKKLVVFLEAVQVPSQM
VSLTVKASEAEKEQNEQVWKAFTQLLEQVETIFGEETLSVDDFLSILRSGMLACDYRTVPATVDVVNVKKYDLIQPHSAP
YVFALGMTQSHFPKVGQNKSLLSDEERSRINEATDEHRSLDIVTQSNSQRGHFVAMSLFNAASEQLVLSQPQILNETQDD
MSVYLKELLDLGLPLVEKGRNRFEAKGDQIGNYKDLLSTVIALNSSHLDADLDKETQTFWSVAVRYLRKRLDEDQVLIPH
VIDDVTTTKVDDQVMQLVFPGEEPLKLSASALTTFYNNQYLYFLRYVLGLEELESIHPDARHHGTYLHRVFERVMGDSSS
ENFDDKLEKAIAQTNQEQPFEILYTEDQESRLSRQILEDIARSTASVLRDNAAVKVEREEAKFDLLLANSIKITGIIDRV
DRLTDGALGVVDYKSGKNVFDIQKFYNGLSPQLVTYLEALRQTYKVDVDQLFGAMYLHMQDPQLNLVQFGLDKLAAQANK
ELTYKGLFVASETEHLAGGNYDLQKTVTYDKEDLETLLDYNIKLFTDAAEIIRSGNFAVNPYTEDGKSVQGDQIKAITHF
EADRHMGQARKLLRLPSKGKKEAYLELMTKDEDKNQMQVAEKAIPFPVTDQAVKADKKDQEDNHVD

Nucleotide


Download         Length: 3321 bp        

>NTDB_id=853029 V6T26_RS01585 WP_410541318.1 285193..288513(+) (rexB) [Streptococcus salivarius strain KSS11]
ATGAAATTACTTTATACGGATATGTCTCAGGATTTAACTGAAATTCTGACGGAGCAGGCAACTAGCTATGCTCAAAAGGG
AAAGAGGGTCTTTTATATTGCTCCTAATGCTCTATCATTTGAAAAGGAGCGTAAGGTCTTGGACTACCTGCCTCAGTCAG
CGTCCTTTGAGATTACGGTGACGCGTTTTACTCAGATGGCTAGGTACTTTATTCTCAATACGAGTAACCCAAAAACTCAG
TTGGATGATACTGGTCTGGCCATGATTTTTTATAAGGTCTTGTCACATATGGACGATGATGAGCTCAAGGTTTATGGTCG
TTTACGCAAGGATAGTAACTTTATTAATCAATTGGTGGACCTTTACAAAGAGTTGCAGCAGGCTAATATGACAGTTCTGG
ATTTGCAGCATTTGGATCAGGCGGAGAAACAAGAGGATTTGGTAAGGATTTTCAGTGTGGCTCAGAATCTCTTGTTGGCG
GGAGATTTCGACAATCAATCCAAACTCAGTGCCTTCTTCAAGGAGATTACCTCAGGCCACCTAGATAAGGCCTTGAGTAA
CACGGTTTTGGTCATTGATGGCTTTACGCGTTTCTCTGCCGAGGAGGAAGCACTGGTTGCACTCTTGAATGATAAGTGCC
ACCAGATTGTCATTGGGACTTATGCCAGTCAAAAAGCTTATAAGGCTAACTTTGTTTATGGCAATGTTTATCAGGCTTCA
GTAGATTTTTTGAGGACTTTGGCTCAGACTTATAAGGTGACACCTGACTACGTGACGACAGACAAAGAGGGCAATCCTTC
TTTTGTACGTATTAGTCGTCTTTTGGAGAGCCGTCATGATTTTAGTACGGTGGATGAGAAGGTTACTGATCAAGACAAGC
AAGCCTTGCAGGTCTGGGAAGTGGTCAACCAAAAGGAAGAAGTGGCTCAGGTTGCCAAGAGTATTCGTCAGTTGCTGGCG
GATGGCAAGCGCTACAAGGATATCTTGGTCCTGCTTGGTGATGAGGAGAGTTATAAGCTTCAGGTGGGTCAGATTTTCCG
AAAATTTGATATTCCCTATTATTTCGGTAAGGAAGAAACCATGTCTAGCCATCCTTTGGTGCAGTTTGTGGATTCGCTAG
AGCGTATCAAGCGCTATAATTATCGTGCCGAGGATTTGCTTAATCTCGTAAAATCAGGTCTCTATGGCGGTTTTACTCAA
GAGGACTTAGACCTTTTTGAGTATTATGTCAATTTTGCAGATATCAAGGGGCGTCACAAGTTCTTGTCTGATTTTACGGC
CAATAGTCGTGATAAGTATGATTTAGACCAGCTTAATGCCTTGCGCTCACAATTGGTAGAGCCCTTGGACAAGTTGCTTA
ACAGTCGCAAACAGAAGGGTTCTAGTCTACTCAAGAAACTTGTGGTCTTTTTAGAGGCTGTGCAAGTGCCAAGTCAGATG
GTTTCTTTGACTGTCAAGGCCAGTGAAGCTGAAAAAGAACAGAATGAACAGGTCTGGAAGGCTTTCACACAACTCTTGGA
GCAGGTTGAGACTATTTTTGGAGAAGAAACGCTGTCAGTGGACGACTTTTTGTCCATTTTGCGTTCGGGAATGTTGGCCT
GTGATTATCGTACGGTTCCAGCCACTGTTGATGTGGTCAATGTGAAGAAATACGATTTGATTCAACCACATTCAGCTCCT
TATGTTTTTGCCTTAGGCATGACTCAGTCGCATTTTCCAAAGGTTGGGCAAAATAAGAGTCTCCTGTCTGATGAGGAGCG
TAGTCGTATCAATGAGGCGACGGATGAGCATAGGAGTTTGGATATTGTTACGCAGAGTAATAGTCAGCGGGGGCATTTTG
TGGCTATGTCGCTTTTCAATGCGGCTAGTGAACAATTGGTGCTTAGTCAGCCACAAATTCTCAATGAGACGCAGGATGAC
ATGTCGGTTTATTTGAAGGAACTTCTTGACCTTGGTCTTCCTTTGGTTGAAAAGGGACGTAATCGTTTCGAGGCTAAGGG
TGACCAGATTGGGAACTACAAGGACCTCCTATCGACTGTCATTGCCCTTAACAGCAGCCATCTAGATGCTGATTTGGACA
AGGAAACGCAGACGTTCTGGTCAGTTGCTGTGCGTTATCTCCGTAAGCGACTTGATGAGGACCAAGTCTTGATCCCACAT
GTGATTGACGATGTGACGACGACCAAGGTGGATGATCAGGTCATGCAGCTGGTCTTTCCGGGGGAAGAACCACTAAAATT
ATCAGCTTCGGCTCTGACGACCTTCTATAACAACCAATATCTTTATTTCTTGCGTTATGTTTTGGGACTTGAAGAGTTGG
AGTCCATCCATCCAGATGCCCGACACCACGGGACTTATTTGCACCGTGTCTTTGAGCGTGTGATGGGTGATTCTTCGTCA
GAAAACTTCGATGATAAATTGGAAAAGGCTATTGCTCAGACCAATCAGGAACAACCCTTTGAAATTCTCTATACCGAGGA
CCAAGAGAGTCGCTTGTCTCGTCAGATCTTGGAAGATATCGCCCGTTCAACTGCCAGTGTTTTGCGTGACAATGCGGCCG
TTAAGGTTGAGCGTGAGGAAGCTAAGTTTGACTTGCTTTTAGCAAATAGCATCAAGATTACAGGGATTATTGACCGTGTG
GACCGTTTAACGGATGGGGCTCTGGGTGTCGTTGACTACAAATCAGGTAAAAATGTCTTTGACATTCAGAAATTCTACAA
TGGCCTCAGTCCGCAATTGGTGACCTATCTGGAGGCCCTTCGACAAACCTATAAGGTCGATGTTGACCAGCTTTTTGGTG
CCATGTATCTTCACATGCAGGACCCACAACTTAACCTAGTCCAGTTTGGTCTGGATAAGCTAGCAGCTCAGGCTAATAAG
GAATTGACCTATAAGGGGCTCTTTGTAGCTTCAGAAACAGAGCATCTGGCTGGTGGAAACTATGATTTACAAAAGACTGT
CACCTATGACAAGGAGGATCTAGAAACCTTGTTAGACTACAATATTAAGCTCTTTACAGATGCTGCTGAGATTATTCGAA
GTGGGAATTTTGCGGTCAATCCTTATACCGAGGATGGCAAGTCTGTTCAAGGGGATCAAATCAAGGCTATTACTCATTTT
GAGGCCGACCGCCACATGGGACAGGCTCGTAAACTCTTGCGTTTACCAAGTAAGGGCAAGAAGGAAGCCTATTTGGAGCT
GATGACAAAAGACGAGGACAAGAATCAGATGCAAGTTGCTGAAAAAGCCATCCCCTTTCCAGTCACTGATCAAGCTGTAA
AAGCAGACAAAAAAGACCAGGAGGACAACCATGTTGACTAA

Domains

Predicted by InterProScan.

PD-(D/E)XK nuclease superfamily (PDDEXK_1)

(747-1023)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rexB Streptococcus pneumoniae R6

43.658

98.373

0.429