Detailed information    

insolico Bioinformatically predicted

Overview

Name   comK/comK1   Type   Regulator
Locus tag   QYE82_RS08515 Genome accession   NZ_CP129374
Coordinates   1811578..1812153 (-) Length   191 a.a.
NCBI ID   WP_301560371.1    Uniprot ID   -
Organism   Staphylococcus epidermidis strain CSMH-411EB     
Function   promote expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 1806578..1817153
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QYE82_RS08470 - 1806721..1806936 (+) 216 WP_001831694.1 NINE protein -
  QYE82_RS12075 - 1807040..1807156 (+) 117 WP_353955890.1 SAR1012 family small protein -
  QYE82_RS08475 - 1807589..1807747 (+) 159 WP_002446129.1 replication/maintenance protein RepL -
  QYE82_RS08480 - 1807817..1808434 (-) 618 WP_301560370.1 LysE family transporter -
  QYE82_RS08485 - 1808438..1809385 (-) 948 WP_002458043.1 fatty acid desaturase family protein -
  QYE82_RS08490 - 1809596..1809831 (-) 236 Protein_1640 recombinase -
  QYE82_RS08495 - 1809852..1809968 (-) 117 WP_002458042.1 hypothetical protein -
  QYE82_RS08500 mobV 1810050..1810507 (-) 458 Protein_1642 MobV family relaxase -
  QYE82_RS08515 comK/comK1 1811578..1812153 (-) 576 WP_301560371.1 competence protein ComK Regulator
  QYE82_RS08520 - 1812368..1812586 (+) 219 WP_301560372.1 IDEAL domain-containing protein -
  QYE82_RS08525 - 1812664..1813650 (-) 987 WP_002458040.1 lipoate--protein ligase -
  QYE82_RS08530 - 1813855..1814040 (+) 186 WP_001829339.1 DUF2187 family protein -
  QYE82_RS08535 - 1814046..1814648 (+) 603 WP_301560373.1 CPBP family glutamic-type intramembrane protease -
  QYE82_RS08540 - 1814751..1816256 (-) 1506 WP_301560374.1 bifunctional UDP-sugar hydrolase/5'-nucleotidase -

Sequence

Protein


Download         Length: 191 a.a.        Molecular weight: 22781.93 Da        Isoelectric Point: 9.6075

>NTDB_id=852933 QYE82_RS08515 WP_301560371.1 1811578..1812153(-) (comK/comK1) [Staphylococcus epidermidis strain CSMH-411EB]
MTHLPETIYVIRKGDMVIRPKYDEYQQTNGTEIIRFDQTRKESPFKVQRIIERSCKFYGNNYISKKAETNRITGISSKPP
ILLTPLFPTYFFPTHSDRQEENIWINMHYIENVKELKNRKSKIIFANGDSLTLNVSFHSLWHQYTNAIIYYYMVDKQSRM
KSNNPEQPIDYNQSSLNIFEALSRYSLFKEN

Nucleotide


Download         Length: 576 bp        

>NTDB_id=852933 QYE82_RS08515 WP_301560371.1 1811578..1812153(-) (comK/comK1) [Staphylococcus epidermidis strain CSMH-411EB]
ATGACACATTTACCCGAAACGATTTATGTTATACGAAAAGGTGATATGGTAATACGACCTAAATATGATGAATATCAGCA
GACAAATGGTACTGAGATTATCAGATTTGATCAAACCCGAAAAGAAAGTCCATTTAAAGTACAGAGAATTATCGAAAGAT
CATGTAAGTTTTATGGCAATAATTATATTAGTAAAAAAGCAGAAACGAATCGTATTACTGGAATTTCTAGTAAACCACCT
ATTTTACTTACACCTCTTTTTCCTACTTACTTTTTTCCAACTCACTCGGACCGTCAAGAAGAAAATATATGGATTAATAT
GCATTATATTGAAAATGTTAAAGAACTTAAAAATCGGAAGAGTAAAATAATTTTTGCGAATGGTGATTCTTTAACACTCA
ATGTATCATTTCATAGTTTGTGGCATCAATACACCAATGCAATCATCTATTATTACATGGTAGATAAGCAATCACGAATG
AAATCTAACAACCCTGAACAACCTATTGACTATAATCAGTCCTCCTTAAATATTTTCGAGGCGCTTTCACGCTACTCTCT
TTTTAAAGAAAATTAG

Domains

Predicted by InterproScan.

ComK protein (ComK)

(7-158)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comK/comK1 Staphylococcus aureus MW2

76.216

96.859

0.738
  comK/comK1 Staphylococcus aureus N315

76.216

96.859

0.738