Detailed information    

insolico Bioinformatically predicted

Overview

Name   comGB   Type   Machinery gene
Locus tag   QYE82_RS06120 Genome accession   NZ_CP129374
Coordinates   1269889..1270956 (+) Length   355 a.a.
NCBI ID   WP_002496884.1    Uniprot ID   -
Organism   Staphylococcus epidermidis strain CSMH-411EB     
Function   dsDNA binding to the cell surface; assembly of the pseudopilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1264889..1275956
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QYE82_RS06090 - 1265307..1266767 (+) 1461 WP_301560327.1 rhomboid family intramembrane serine protease -
  QYE82_RS06095 - 1266751..1266951 (+) 201 WP_002446537.1 YqgQ family protein -
  QYE82_RS06100 - 1266951..1267937 (+) 987 WP_020362277.1 ROK family glucokinase -
  QYE82_RS06105 - 1267937..1268263 (+) 327 WP_001831234.1 MTH1187 family thiamine-binding protein -
  QYE82_RS06110 - 1268263..1268886 (+) 624 WP_002446535.1 MBL fold metallo-hydrolase -
  QYE82_RS06115 comGA 1268943..1269917 (+) 975 WP_301560328.1 competence type IV pilus ATPase ComGA Machinery gene
  QYE82_RS06120 comGB 1269889..1270956 (+) 1068 WP_002496884.1 competence type IV pilus assembly protein ComGB Machinery gene
  QYE82_RS06125 comGC 1270974..1271291 (+) 318 WP_002446532.1 competence type IV pilus major pilin ComGC Machinery gene
  QYE82_RS06130 comGD 1271281..1271718 (+) 438 WP_301560329.1 competence type IV pilus minor pilin ComGD -
  QYE82_RS06135 - 1271705..1271998 (+) 294 WP_020367648.1 hypothetical protein -
  QYE82_RS06140 comGF 1271922..1272413 (+) 492 WP_301560330.1 competence type IV pilus minor pilin ComGF -
  QYE82_RS06145 - 1272578..1273090 (+) 513 WP_002496881.1 shikimate kinase -
  QYE82_RS06150 gcvT 1273308..1274399 (+) 1092 WP_002501008.1 glycine cleavage system aminomethyltransferase GcvT -
  QYE82_RS06155 gcvPA 1274419..1275765 (+) 1347 WP_002497331.1 aminomethyl-transferring glycine dehydrogenase subunit GcvPA -

Sequence

Protein


Download         Length: 355 a.a.        Molecular weight: 42313.54 Da        Isoelectric Point: 10.0471

>NTDB_id=852926 QYE82_RS06120 WP_002496884.1 1269889..1270956(+) (comGB) [Staphylococcus epidermidis strain CSMH-411EB]
MKKLSINTFKYKRNKYLTEIQSIDLLQRLHQLLSHGFTLYQSFKFLNSYFKYKERTINEKIIQHLQNGATCYDILKMIGY
PELVLLQIKFAENYGNIDEALVDTVQYMKRNLKAKKRLIKTLQYPVALISIFLFILTILNITVIPQFQQLYETMNVKLST
FQNLVTLIITLLPKLTFIFIFMSGIAFFITYKFYYYLPIERKLKSILKIPMINTYYKIYRTYQLSNQFSLFYRNGTSLQQ
IVQIYRNEQDNEFLKFLGNCLFKEANKGLPLPAILMNLKCFQNDLIKFIEQGEKNGKLDIELKLYSQMLLQQFEEKVLKQ
TKFIQPIIFFILGIFIVSLYLVIMLPMFELMQTIK

Nucleotide


Download         Length: 1068 bp        

>NTDB_id=852926 QYE82_RS06120 WP_002496884.1 1269889..1270956(+) (comGB) [Staphylococcus epidermidis strain CSMH-411EB]
GTGAAGAAGTTGTCGATAAATACATTTAAATATAAGAGGAATAAATATCTTACTGAAATACAATCAATAGACTTATTACA
GAGATTACATCAGCTTTTAAGTCACGGATTCACTTTATATCAAAGTTTTAAATTTTTAAACTCCTATTTTAAATATAAAG
AACGAACAATAAATGAAAAGATTATCCAACATCTACAAAACGGCGCTACATGTTATGATATTTTAAAAATGATAGGGTAT
CCAGAATTAGTTCTTCTTCAAATAAAATTTGCTGAAAACTACGGTAACATTGATGAGGCTCTCGTTGATACTGTTCAATA
TATGAAAAGAAATTTGAAAGCTAAAAAACGACTCATCAAAACCTTACAATATCCTGTTGCATTAATTTCTATCTTCTTAT
TCATATTAACCATTTTAAATATTACTGTCATACCTCAATTTCAACAACTTTATGAGACTATGAATGTTAAATTATCAACA
TTTCAAAATCTAGTAACTCTTATTATTACCCTTCTTCCCAAGCTAACTTTCATTTTTATCTTTATGAGTGGTATAGCATT
TTTTATCACTTATAAATTTTACTATTATCTACCAATTGAGAGAAAATTAAAATCTATTTTAAAAATCCCAATGATTAATA
CGTATTATAAAATATATAGAACTTATCAACTTTCCAATCAGTTTTCTTTATTTTACAGAAATGGTACAAGTCTTCAACAA
ATTGTCCAAATATATCGTAATGAGCAAGATAACGAATTTCTTAAATTTCTGGGTAATTGTCTTTTTAAAGAAGCTAATAA
AGGACTCCCGTTACCTGCTATATTAATGAATTTAAAATGTTTTCAAAATGATTTAATTAAATTCATAGAACAAGGAGAGA
AAAATGGAAAATTAGATATAGAATTAAAGTTATACAGTCAAATGTTATTACAGCAATTTGAGGAAAAAGTGTTAAAACAA
ACAAAATTTATACAACCTATCATCTTCTTTATCTTGGGAATATTTATTGTATCTTTATACTTAGTCATTATGCTTCCTAT
GTTCGAACTTATGCAAACAATAAAATAA

Domains

Predicted by InterproScan.

Type II secretion system (T2SS), protein F (T2SSF)

(26-145)

Type II secretion system (T2SS), protein F (T2SSF)

(226-346)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comGB Staphylococcus aureus MW2

48.596

100

0.487
  comGB Staphylococcus aureus N315

48.596

100

0.487