Detailed information    

insolico Bioinformatically predicted

Overview

Name   recP/tkt   Type   Machinery gene
Locus tag   V6T01_RS02490 Genome accession   NZ_CP145856
Coordinates   482455..484440 (+) Length   661 a.a.
NCBI ID   WP_410541187.1    Uniprot ID   -
Organism   Streptococcus salivarius strain KSS1     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 477455..489440
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  V6T01_RS02470 (V6T01_02460) - 477792..478208 (+) 417 WP_002890211.1 F0F1 ATP synthase subunit epsilon -
  V6T01_RS02475 (V6T01_02465) ftsW 478467..479747 (+) 1281 WP_410541678.1 cell division peptidoglycan polymerase FtsW -
  V6T01_RS02480 (V6T01_02470) tuf 479984..481180 (+) 1197 WP_410532675.1 elongation factor Tu -
  V6T01_RS02485 (V6T01_02475) tpiA 481435..482193 (+) 759 WP_002890214.1 triose-phosphate isomerase -
  V6T01_RS02490 (V6T01_02480) recP/tkt 482455..484440 (+) 1986 WP_410541187.1 transketolase Machinery gene
  V6T01_RS02500 (V6T01_02490) tmk 484751..485380 (+) 630 WP_410532679.1 dTMP kinase -
  V6T01_RS02505 (V6T01_02495) - 485389..486264 (+) 876 WP_410532681.1 DNA polymerase III subunit delta' -
  V6T01_RS02510 (V6T01_02500) yaaT 486261..487067 (+) 807 WP_410541186.1 regulatory iron-sulfur-containing complex subunit RicT Regulator
  V6T01_RS02515 (V6T01_02505) yabA 487054..487374 (+) 321 WP_002887582.1 DNA replication initiation control protein YabA -
  V6T01_RS02520 (V6T01_02510) rsmI 487377..488243 (+) 867 WP_410541185.1 16S rRNA (cytidine(1402)-2'-O)-methyltransferase -

Sequence

Protein


Download         Length: 661 a.a.        Molecular weight: 70877.57 Da        Isoelectric Point: 4.8481

>NTDB_id=852924 V6T01_RS02490 WP_410541187.1 482455..484440(+) (recP/tkt) [Streptococcus salivarius strain KSS1]
MTFDAIDQMAVSTIRSLSIEAIQAANSGHPGLPMGAAPMAYVLWNHVMNVNPKTSRNWTNRDRFVLSAGHGSALLYSLLH
LSGYDVTMDDLKNFRQWGSKTPGHPEVNHTDGVEATSGPLGQGIANAVGMAMAEAHLAAKFNKPGFDIVDHYTYALHGDG
CLMEGVSQEAASLAGHLKLGKLVLLYDSNDISLDGPTSMAFTEDVKAKFEAYGWQHILVKDGNDLEAIAKAIEEAKAETD
KPSIVEVKTIIGYGAEGQGTSAVHGAPIGQDGIDHAKGVYGYDAPAFTVPDEVARRFEAGIKFRGEAAENAWQTKFAEYE
TAYPELAAEYKAAFANEPVHVNLNAHELGSAVASRVSSQQAIQQISEQVPSFWGGSADLSASNNTMVKAESDFQADNYAG
RNIWFGVREFAMAAAMNGIALHGGTRVYGGTFFVFSNYLLPAVRMAALQNLPVTYVMTHDSVAVGEDGPTHEPIEQLASV
RSMPNLNVIRPADGNETNAAWKRALAETKRPTMLVLTRQNLPVLEGTAENAEAGVNKGAYIISEAKGDLDGIIIATGSEV
KLALDTQAALEAEGVHVRVVSMPSQNLFDEQDAAYKEEVLPAAVTKRLAIEAGTSFGWDKYVGLAGKTLTIDTWGASAPG
DRIFKEYGFTVENASQLYKSL

Nucleotide


Download         Length: 1986 bp        

>NTDB_id=852924 V6T01_RS02490 WP_410541187.1 482455..484440(+) (recP/tkt) [Streptococcus salivarius strain KSS1]
ATGACTTTTGATGCAATTGACCAAATGGCGGTCAGCACTATTCGTTCGCTTTCGATCGAGGCAATTCAAGCCGCGAATTC
TGGGCACCCAGGTCTTCCTATGGGTGCAGCGCCAATGGCTTATGTGCTTTGGAACCATGTGATGAATGTTAATCCAAAGA
CTAGCCGTAACTGGACAAACCGTGACCGTTTTGTTCTTTCTGCTGGTCATGGTTCTGCCTTGCTTTATAGTCTATTGCAC
CTTTCTGGCTATGATGTGACAATGGACGACTTGAAGAATTTCCGTCAATGGGGCTCTAAGACTCCAGGTCACCCTGAAGT
TAACCATACTGATGGTGTTGAAGCAACATCAGGTCCTCTTGGTCAAGGGATTGCTAATGCTGTAGGTATGGCAATGGCTG
AAGCACACTTGGCAGCTAAATTTAACAAACCTGGTTTTGATATTGTTGACCATTATACTTATGCTCTCCATGGCGATGGT
TGTTTGATGGAAGGTGTTTCGCAAGAAGCTGCCAGTCTTGCTGGTCACCTTAAACTTGGTAAGTTGGTACTTCTTTACGA
TTCAAATGATATCTCACTTGATGGACCAACTTCAATGGCTTTCACTGAAGATGTTAAGGCTAAGTTTGAAGCTTATGGTT
GGCAACACATTCTTGTCAAAGATGGTAATGATTTGGAAGCTATTGCTAAAGCCATCGAAGAAGCTAAGGCTGAGACAGAT
AAACCATCTATCGTTGAAGTTAAGACAATCATTGGTTATGGAGCTGAAGGACAAGGAACATCAGCTGTCCACGGTGCTCC
AATCGGTCAAGATGGCATTGATCACGCAAAAGGTGTTTACGGTTATGATGCACCGGCATTTACAGTTCCAGATGAAGTTG
CTCGTCGTTTTGAAGCTGGTATTAAATTCCGTGGTGAAGCTGCTGAAAATGCTTGGCAAACTAAATTTGCAGAATATGAA
ACTGCTTACCCAGAATTGGCTGCTGAATACAAGGCTGCCTTTGCAAATGAACCTGTACACGTTAACTTGAATGCTCATGA
ATTGGGTTCAGCAGTAGCTAGCCGTGTATCAAGCCAACAAGCTATCCAACAGATTTCTGAACAAGTTCCTTCATTCTGGG
GAGGTTCAGCAGACCTTTCAGCTTCTAACAATACTATGGTTAAGGCTGAGTCTGATTTCCAAGCAGATAATTATGCTGGA
CGTAATATTTGGTTTGGTGTGCGTGAGTTTGCTATGGCTGCAGCGATGAATGGTATTGCTCTTCATGGTGGTACTCGTGT
TTATGGTGGTACCTTCTTCGTCTTCTCAAACTACTTGCTTCCAGCAGTACGTATGGCAGCTCTTCAAAACTTGCCAGTGA
CTTATGTTATGACACACGATTCAGTAGCAGTTGGTGAAGATGGACCTACTCACGAACCAATCGAACAATTGGCAAGTGTG
CGTTCAATGCCTAACCTTAACGTTATCCGTCCTGCAGATGGTAATGAAACTAATGCTGCATGGAAACGTGCCTTGGCTGA
GACTAAACGTCCAACAATGCTTGTCTTGACACGTCAAAACTTGCCAGTGCTTGAGGGTACAGCTGAAAATGCTGAAGCTG
GTGTCAATAAAGGAGCTTATATCATCTCTGAAGCTAAAGGTGATCTTGATGGTATCATCATTGCGACTGGTTCAGAAGTG
AAATTGGCGCTTGATACGCAAGCTGCTCTTGAAGCAGAAGGTGTGCATGTTCGTGTTGTTTCAATGCCATCACAAAATCT
CTTTGATGAACAAGATGCTGCTTACAAAGAAGAAGTTCTTCCAGCAGCTGTGACAAAACGTTTGGCTATCGAAGCTGGAA
CTAGCTTTGGTTGGGACAAATATGTTGGTCTTGCAGGTAAAACACTTACTATTGATACTTGGGGTGCCTCAGCACCTGGT
GACCGTATCTTTAAAGAATATGGTTTCACTGTTGAAAATGCAAGTCAACTTTACAAATCATTGTAA

Domains

Predicted by InterProScan.

Transketolase, C-terminal domain (Transketolase_C)

(552-652)

Transketolase, pyrimidine binding domain (Transket_pyr)

(352-522)

Transketolase, thiamine diphosphate binding domain (Transketolase_N)

(6-334)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recP/tkt Streptococcus pneumoniae TIGR4

56.687

99.546

0.564