Detailed information    

insolico Bioinformatically predicted

Overview

Name   comE/blpR   Type   Regulator
Locus tag   V6T01_RS02305 Genome accession   NZ_CP145856
Coordinates   442313..443065 (+) Length   250 a.a.
NCBI ID   WP_037600457.1    Uniprot ID   -
Organism   Streptococcus salivarius strain KSS1     
Function   activate transcription of early competence genes; regulation of comX expression (predicted from homology)   
Competence regulation

Genomic Context

Location: 437313..448065
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  V6T01_RS02290 (V6T01_02280) - 438196..438888 (+) 693 WP_038675425.1 DUF6287 domain-containing protein -
  V6T01_RS02295 (V6T01_02285) - 438953..439252 (+) 300 WP_060973374.1 hypothetical protein -
  V6T01_RS02300 (V6T01_02290) - 439529..442111 (+) 2583 WP_410541198.1 SH3 domain-containing protein -
  V6T01_RS02305 (V6T01_02295) comE/blpR 442313..443065 (+) 753 WP_037600457.1 response regulator transcription factor Regulator
  V6T01_RS02310 (V6T01_02300) - 443201..443866 (+) 666 WP_037600454.1 DUF6287 domain-containing protein -
  V6T01_RS02315 (V6T01_02305) comE/blpR 444113..444847 (+) 735 WP_037599526.1 response regulator transcription factor Regulator
  V6T01_RS02320 (V6T01_02310) - 444844..446163 (+) 1320 WP_410541197.1 sensor histidine kinase -
  V6T01_RS02325 (V6T01_02315) - 446261..446914 (+) 654 WP_410541196.1 DUF6287 domain-containing protein -

Sequence

Protein


Download         Length: 250 a.a.        Molecular weight: 28721.22 Da        Isoelectric Point: 5.6364

>NTDB_id=852921 V6T01_RS02305 WP_037600457.1 442313..443065(+) (comE/blpR) [Streptococcus salivarius strain KSS1]
MLDIFVLEEDYFQQARLEDAIHKSKQIYILRIGKVNLYDKPNQLLERITERGSHLLFFLDIGSDSDIEGGVLVAQQIRER
DPYASIVFITAHPELLPSTFQYRLAALDFIDKNLPDIEYEDRIISDIGLVLSKNGLSQIECAFTVDTKNATIQVPFHKIL
YFETSPTVHKVILHTTEEQIEFYGQLSKIVKQDCRLYKCHKSFVVNPENIVRLDKELGVIYFENGESCLVSKAKQKEIVA
KMLVPKPMAV

Nucleotide


Download         Length: 753 bp        

>NTDB_id=852921 V6T01_RS02305 WP_037600457.1 442313..443065(+) (comE/blpR) [Streptococcus salivarius strain KSS1]
ATGTTAGATATTTTTGTTTTAGAAGAAGATTATTTTCAACAAGCTCGTCTTGAGGATGCCATCCACAAGTCTAAACAAAT
ATATATTTTAAGAATTGGGAAGGTCAATTTATACGATAAACCCAATCAATTATTAGAGCGTATTACGGAAAGGGGCTCGC
ATTTACTGTTTTTTCTAGATATTGGATCTGATAGTGATATCGAAGGGGGAGTATTGGTTGCTCAACAGATTCGTGAGCGA
GATCCTTATGCTAGTATTGTTTTCATCACAGCACATCCCGAACTCCTACCTTCAACCTTTCAGTATCGCTTAGCTGCACT
TGATTTTATTGACAAGAATTTGCCTGATATTGAATATGAAGATAGGATTATTTCTGATATTGGATTAGTACTTTCTAAAA
ATGGTTTGAGCCAAATAGAGTGTGCTTTTACGGTAGATACAAAGAATGCAACTATACAAGTTCCTTTTCATAAGATTCTT
TATTTTGAAACATCTCCAACAGTTCATAAGGTGATTCTTCATACAACGGAAGAGCAGATTGAGTTCTATGGTCAATTGTC
AAAAATTGTGAAACAAGACTGCAGACTATATAAATGCCATAAATCATTTGTTGTAAATCCCGAAAACATTGTGAGATTGG
ACAAAGAGTTAGGTGTAATTTATTTTGAAAATGGAGAGTCATGCTTGGTTTCGAAAGCTAAACAAAAAGAGATTGTTGCT
AAGATGCTTGTTCCAAAACCCATGGCAGTTTGA

Domains

Predicted by InterProScan.

LytTr DNA-binding domain (LytTR)

(151-240)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comE/blpR Streptococcus mutans UA159

45.679

97.2

0.444
  comE/comE1 Streptococcus equinus JB1

41.322

96.8

0.4