Detailed information    

insolico Bioinformatically predicted

Overview

Name   vraR   Type   Regulator
Locus tag   QYE82_RS04515 Genome accession   NZ_CP129374
Coordinates   954345..954974 (+) Length   209 a.a.
NCBI ID   WP_002447440.1    Uniprot ID   -
Organism   Staphylococcus epidermidis strain CSMH-411EB     
Function   repress expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 949345..959974
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QYE82_RS04485 - 949449..949985 (+) 537 WP_002447446.1 hypothetical protein -
  QYE82_RS04490 - 950137..951123 (-) 987 WP_301560538.1 aromatic acid exporter family protein -
  QYE82_RS04495 map 951297..952052 (+) 756 WP_162154623.1 type I methionyl aminopeptidase -
  QYE82_RS04500 - 952210..952596 (+) 387 WP_301560539.1 hypothetical protein -
  QYE82_RS04505 liaF 952611..953312 (+) 702 WP_002447442.1 cell wall-active antibiotics response protein LiaF -
  QYE82_RS04510 vraS 953309..954355 (+) 1047 WP_002447441.1 sensor histidine kinase Regulator
  QYE82_RS04515 vraR 954345..954974 (+) 630 WP_002447440.1 two-component system response regulator VraR Regulator
  QYE82_RS04520 - 955031..956209 (-) 1179 WP_301560540.1 YihY/virulence factor BrkB family protein -
  QYE82_RS04525 - 956615..956899 (-) 285 WP_002447438.1 YtxH domain-containing protein -
  QYE82_RS04530 - 956907..957371 (-) 465 WP_001830437.1 low molecular weight protein-tyrosine-phosphatase -
  QYE82_RS04535 - 957513..957728 (+) 216 WP_194378442.1 DUF1128 domain-containing protein -
  QYE82_RS04540 - 957730..958971 (+) 1242 WP_194378441.1 aminopeptidase -
  QYE82_RS04545 - 959052..959582 (+) 531 WP_002447436.1 acyl-CoA thioesterase -

Sequence

Protein


Download         Length: 209 a.a.        Molecular weight: 23612.25 Da        Isoelectric Point: 4.7218

>NTDB_id=852917 QYE82_RS04515 WP_002447440.1 954345..954974(+) (vraR) [Staphylococcus epidermidis strain CSMH-411EB]
MAIKILFVDDHEMVRIGISSYLSTQEDIEVVGEGASGKEAITKAHELKPDLILMDLLMDDMDGVEATTEIKKDLPQIKVV
MLTSFIEDKEVYRALDSGVDSYILKTTSASDIADAVRKTYEGESVFEPEVLVKMRNRMKKRAELYEMLTEREMEILLLIA
KGYSNQEIASASHITIKTVKTHVSNILSKLEVQDRTQAVIYAFQHNLIQ

Nucleotide


Download         Length: 630 bp        

>NTDB_id=852917 QYE82_RS04515 WP_002447440.1 954345..954974(+) (vraR) [Staphylococcus epidermidis strain CSMH-411EB]
GTGGCGATTAAAATTTTATTTGTTGATGATCATGAAATGGTAAGAATCGGTATTTCAAGCTATCTTTCAACACAAGAAGA
TATAGAAGTAGTAGGTGAGGGTGCTTCTGGTAAGGAGGCTATCACTAAAGCGCATGAGCTAAAACCAGATTTAATATTAA
TGGATTTACTTATGGACGATATGGATGGTGTAGAAGCTACTACTGAAATAAAAAAAGATTTACCTCAAATTAAAGTAGTC
ATGTTAACAAGCTTTATAGAAGATAAAGAAGTTTATCGTGCACTTGATTCTGGAGTAGATAGTTATATTTTAAAGACAAC
AAGTGCAAGTGATATAGCTGACGCTGTGCGTAAAACGTATGAAGGTGAATCAGTATTTGAACCAGAAGTGTTAGTAAAAA
TGCGCAACCGTATGAAAAAACGTGCCGAGCTTTATGAAATGTTAACAGAAAGAGAAATGGAGATCTTATTACTTATAGCT
AAAGGATACTCTAACCAAGAGATTGCAAGCGCCTCTCATATCACCATCAAAACAGTAAAAACTCATGTAAGTAACATACT
GAGTAAATTAGAAGTACAAGATCGAACACAAGCAGTAATCTATGCGTTTCAGCATAATTTAATTCAATAA

Domains

Predicted by InterproScan.

Bacterial regulatory proteins, luxR family (GerE)

(147-202)

Response regulator receiver domain (Response_reg)

(5-116)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  vraR Staphylococcus aureus N315

94.737

100

0.947
  degU Bacillus subtilis subsp. subtilis str. 168

35.268

100

0.378