Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   QYE82_RS03895 Genome accession   NZ_CP129374
Coordinates   831358..831753 (+) Length   131 a.a.
NCBI ID   WP_002447777.1    Uniprot ID   -
Organism   Staphylococcus epidermidis strain CSMH-411EB     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 826358..836753
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QYE82_RS03870 - 827777..828181 (+) 405 WP_002447782.1 F0F1 ATP synthase subunit epsilon -
  QYE82_RS03875 - 828330..828563 (+) 234 WP_002495678.1 DUF1146 family protein -
  QYE82_RS03880 murA 828673..829938 (+) 1266 WP_002458708.1 UDP-N-acetylglucosamine 1-carboxyvinyltransferase -
  QYE82_RS03885 fabZ 829972..830409 (+) 438 WP_002458707.1 3-hydroxyacyl-ACP dehydratase FabZ -
  QYE82_RS03890 - 830727..831167 (-) 441 WP_002458706.1 YwpF-like family protein -
  QYE82_RS03895 ssb 831358..831753 (+) 396 WP_002447777.1 single-stranded DNA-binding protein Machinery gene
  QYE82_RS03900 - 832141..832800 (+) 660 WP_002447776.1 transglycosylase family protein -
  QYE82_RS03905 tenA 833084..833773 (+) 690 WP_002447775.1 thiaminase II -
  QYE82_RS03910 thiD 833766..834587 (+) 822 WP_002458705.1 bifunctional hydroxymethylpyrimidine kinase/phosphomethylpyrimidine kinase -
  QYE82_RS03915 thiM 834580..835368 (+) 789 WP_020363517.1 hydroxyethylthiazole kinase -
  QYE82_RS03920 thiE 835374..836012 (+) 639 WP_002458704.1 thiamine phosphate synthase -

Sequence

Protein


Download         Length: 131 a.a.        Molecular weight: 15144.99 Da        Isoelectric Point: 5.2661

>NTDB_id=852914 QYE82_RS03895 WP_002447777.1 831358..831753(+) (ssb) [Staphylococcus epidermidis strain CSMH-411EB]
MLNKIVIVGRMTKDAQIYEKEDNKIATFCVATERNYKDDNNEISSDYLLCKAFGKTATNIEKYTSQGTLVGITGQMRSRK
YEKEGQTHFVTELYVETIKFMSPKNKNNETPSDNQFENNTYQPDDLEIIHI

Nucleotide


Download         Length: 396 bp        

>NTDB_id=852914 QYE82_RS03895 WP_002447777.1 831358..831753(+) (ssb) [Staphylococcus epidermidis strain CSMH-411EB]
ATGTTAAATAAAATAGTCATTGTTGGTAGAATGACGAAAGATGCTCAAATATATGAAAAGGAGGATAACAAAATAGCAAC
ATTTTGCGTTGCTACAGAAAGAAACTACAAAGATGATAATAACGAAATTTCTTCAGATTATTTGCTTTGTAAAGCTTTCG
GTAAAACTGCCACTAATATTGAAAAGTACACTAGTCAAGGTACTTTAGTAGGTATAACTGGGCAAATGCGTTCAAGAAAA
TATGAAAAAGAAGGCCAAACACATTTTGTTACAGAATTATACGTTGAAACAATTAAATTCATGTCCCCAAAAAATAAAAA
CAATGAAACTCCCTCTGATAATCAATTTGAAAACAACACTTATCAACCTGATGATTTAGAAATAATTCATATTTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(2-101)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Staphylococcus aureus N315

74.046

100

0.74
  ssb Staphylococcus aureus MW2

73.282

100

0.733