Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   QYE83_RS03745 Genome accession   NZ_CP129372
Coordinates   820981..821376 (+) Length   131 a.a.
NCBI ID   WP_002447777.1    Uniprot ID   -
Organism   Staphylococcus epidermidis strain CCSH-141     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 815981..826376
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QYE83_RS03720 - 817400..817804 (+) 405 WP_002447782.1 F0F1 ATP synthase subunit epsilon -
  QYE83_RS03725 - 817953..818186 (+) 234 WP_002495678.1 DUF1146 family protein -
  QYE83_RS03730 murA 818296..819561 (+) 1266 WP_002490700.1 UDP-N-acetylglucosamine 1-carboxyvinyltransferase -
  QYE83_RS03735 fabZ 819595..820032 (+) 438 WP_002447779.1 3-hydroxyacyl-ACP dehydratase FabZ -
  QYE83_RS03740 - 820350..820790 (-) 441 WP_002458706.1 YwpF-like family protein -
  QYE83_RS03745 ssb 820981..821376 (+) 396 WP_002447777.1 single-stranded DNA-binding protein Machinery gene
  QYE83_RS03750 - 821764..822423 (+) 660 WP_002447776.1 transglycosylase family protein -
  QYE83_RS03755 tenA 822707..823396 (+) 690 WP_002447775.1 thiaminase II -
  QYE83_RS03760 thiD 823389..824210 (+) 822 WP_099774941.1 bifunctional hydroxymethylpyrimidine kinase/phosphomethylpyrimidine kinase -
  QYE83_RS03765 thiM 824203..824991 (+) 789 WP_002486939.1 hydroxyethylthiazole kinase -
  QYE83_RS03770 thiE 824997..825635 (+) 639 WP_002458704.1 thiamine phosphate synthase -

Sequence

Protein


Download         Length: 131 a.a.        Molecular weight: 15144.99 Da        Isoelectric Point: 5.2661

>NTDB_id=852881 QYE83_RS03745 WP_002447777.1 820981..821376(+) (ssb) [Staphylococcus epidermidis strain CCSH-141]
MLNKIVIVGRMTKDAQIYEKEDNKIATFCVATERNYKDDNNEISSDYLLCKAFGKTATNIEKYTSQGTLVGITGQMRSRK
YEKEGQTHFVTELYVETIKFMSPKNKNNETPSDNQFENNTYQPDDLEIIHI

Nucleotide


Download         Length: 396 bp        

>NTDB_id=852881 QYE83_RS03745 WP_002447777.1 820981..821376(+) (ssb) [Staphylococcus epidermidis strain CCSH-141]
ATGTTAAATAAAATAGTCATTGTTGGTAGAATGACGAAAGATGCTCAAATATATGAAAAGGAGGATAACAAAATAGCAAC
ATTTTGCGTTGCTACAGAAAGAAACTACAAAGATGATAATAACGAAATTTCTTCAGATTATTTGCTTTGTAAAGCTTTCG
GTAAAACTGCCACTAATATTGAAAAGTACACTAGTCAAGGTACTTTAGTAGGTATAACTGGGCAAATGCGTTCAAGAAAA
TATGAAAAAGAAGGCCAAACACATTTTGTTACAGAATTATACGTTGAAACAATTAAATTCATGTCCCCAAAAAATAAAAA
CAATGAAACTCCCTCTGATAATCAATTTGAAAACAACACTTATCAACCTGATGATTTAGAAATAATTCATATTTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(2-101)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Staphylococcus aureus N315

74.046

100

0.74
  ssb Staphylococcus aureus MW2

73.282

100

0.733