Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   QYE84_RS04585 Genome accession   NZ_CP129369
Coordinates   945351..945749 (+) Length   132 a.a.
NCBI ID   WP_011275249.1    Uniprot ID   A0A5B2YX53
Organism   Staphylococcus haemolyticus strain CJFE-402M     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 940351..950749
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QYE84_RS04555 atpD 940627..942039 (+) 1413 WP_011275243.1 F0F1 ATP synthase subunit beta -
  QYE84_RS04560 - 942060..942461 (+) 402 WP_011275244.1 F0F1 ATP synthase subunit epsilon -
  QYE84_RS04565 - 942589..942822 (+) 234 WP_011275245.1 DUF1146 family protein -
  QYE84_RS04570 murA 942927..944192 (+) 1266 WP_037538805.1 UDP-N-acetylglucosamine 1-carboxyvinyltransferase -
  QYE84_RS04575 fabZ 944232..944669 (+) 438 WP_016931213.1 3-hydroxyacyl-ACP dehydratase FabZ -
  QYE84_RS04580 - 944720..945163 (-) 444 WP_011275248.1 YwpF-like family protein -
  QYE84_RS04585 ssb 945351..945749 (+) 399 WP_011275249.1 single-stranded DNA-binding protein Machinery gene
  QYE84_RS04590 - 946087..946794 (+) 708 WP_011275250.1 transglycosylase family protein -
  QYE84_RS04595 tenA 947083..947772 (+) 690 WP_037538799.1 thiaminase II -
  QYE84_RS04600 thiD 947765..948586 (+) 822 WP_301402731.1 bifunctional hydroxymethylpyrimidine kinase/phosphomethylpyrimidine kinase -
  QYE84_RS04605 thiM 948579..949370 (+) 792 WP_037538795.1 hydroxyethylthiazole kinase -
  QYE84_RS04610 thiE 949372..950010 (+) 639 WP_053018799.1 thiamine phosphate synthase -

Sequence

Protein


Download         Length: 132 a.a.        Molecular weight: 15141.05 Da        Isoelectric Point: 4.7942

>NTDB_id=852849 QYE84_RS04585 WP_011275249.1 945351..945749(+) (ssb) [Staphylococcus haemolyticus strain CJFE-402M]
MLNKIVIVGRLTKKAQIFENEEVKIATFCVATERNYKDENNEIACDYIFCKAFGKTATNIESYTDQGTLVGITGQMRSRK
YDKDGQTHFVTELYVETIKFMSPKSKNDNILPNTSYDEDAYSFDHLEVIDVN

Nucleotide


Download         Length: 399 bp        

>NTDB_id=852849 QYE84_RS04585 WP_011275249.1 945351..945749(+) (ssb) [Staphylococcus haemolyticus strain CJFE-402M]
ATGCTAAATAAAATTGTGATAGTAGGTCGATTGACCAAAAAGGCACAAATATTTGAAAACGAGGAGGTGAAGATAGCTAC
GTTCTGTGTTGCAACTGAACGTAATTATAAAGATGAAAATAATGAAATAGCTTGTGATTATATTTTTTGTAAGGCATTTG
GTAAAACAGCAACAAATATAGAATCATATACAGACCAAGGCACTTTAGTTGGTATTACAGGACAAATGAGATCTCGTAAG
TACGATAAAGATGGCCAAACGCATTTTGTGACTGAATTATATGTTGAAACAATTAAATTTATGTCCCCTAAATCTAAAAA
CGATAATATTCTTCCTAACACCTCATATGATGAAGACGCTTATTCCTTTGATCACCTTGAAGTGATTGATGTTAACTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(2-101)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A5B2YX53

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Staphylococcus aureus N315

75.573

99.242

0.75
  ssb Staphylococcus aureus MW2

74.809

99.242

0.742