Detailed information    

insolico Bioinformatically predicted

Overview

Name   comK/comK1   Type   Regulator
Locus tag   QYE85_RS08460 Genome accession   NZ_CP129365
Coordinates   1802286..1802861 (-) Length   191 a.a.
NCBI ID   WP_001829272.1    Uniprot ID   -
Organism   Staphylococcus epidermidis strain CKFA-393     
Function   promote expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 1797286..1807861
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QYE85_RS08415 - 1797982..1798197 (+) 216 WP_001831694.1 NINE protein -
  QYE85_RS11675 - 1798301..1798417 (+) 117 WP_353955880.1 SAR1012 family small protein -
  QYE85_RS08420 - 1798848..1799006 (+) 159 WP_001829449.1 hypothetical protein -
  QYE85_RS08425 - 1799076..1799588 (-) 513 WP_224788133.1 LysE family transporter -
  QYE85_RS08430 - 1799696..1800037 (-) 342 WP_002456621.1 fatty acid desaturase -
  QYE85_RS08435 - 1800250..1800486 (-) 237 WP_001829451.1 hypothetical protein -
  QYE85_RS11680 mobV 1800688..1801248 (-) 561 Protein_1634 MobV family relaxase -
  QYE85_RS08460 comK/comK1 1802286..1802861 (-) 576 WP_001829272.1 competence protein ComK Regulator
  QYE85_RS08465 - 1803076..1803294 (+) 219 WP_001829292.1 IDEAL domain-containing protein -
  QYE85_RS08470 - 1803372..1804358 (-) 987 WP_001829269.1 lipoate--protein ligase -
  QYE85_RS08475 - 1804563..1804748 (+) 186 WP_001829339.1 DUF2187 family protein -
  QYE85_RS08480 - 1804754..1805356 (+) 603 WP_001829312.1 CPBP family glutamic-type intramembrane protease -
  QYE85_RS08485 - 1805459..1806964 (-) 1506 WP_001829277.1 bifunctional UDP-sugar hydrolase/5'-nucleotidase -

Sequence

Protein


Download         Length: 191 a.a.        Molecular weight: 22782.87 Da        Isoelectric Point: 9.2887

>NTDB_id=852829 QYE85_RS08460 WP_001829272.1 1802286..1802861(-) (comK/comK1) [Staphylococcus epidermidis strain CKFA-393]
MTHLPETIYVIRKGDMVIRPKYDEYQQTNGTEIIRFDQTRKESPFKVQRIIERSCKFYGNNYISKKAETNRITGISSKPP
ILLTPLFPTYFFPTHSDRQEENIWINMHYIENVKELKNRKSKIIFANGDSLTLNVSFHSLWHQYTNAIIYYYMVDKQSRM
KSNNPEQPIDYNQSSLNIFEALSRYSLFEEN

Nucleotide


Download         Length: 576 bp        

>NTDB_id=852829 QYE85_RS08460 WP_001829272.1 1802286..1802861(-) (comK/comK1) [Staphylococcus epidermidis strain CKFA-393]
ATGACACATTTACCCGAAACGATTTATGTTATACGAAAAGGTGATATGGTAATACGACCTAAATATGATGAATATCAGCA
AACAAATGGTACTGAAATTATCAGATTTGATCAAACTCGCAAAGAAAGTCCATTTAAAGTACAGAGAATTATCGAAAGAT
CATGTAAATTTTATGGTAATAATTATATTAGTAAAAAAGCAGAAACGAATCGTATTACTGGAATCTCTAGTAAACCACCT
ATTTTACTTACGCCTCTTTTTCCTACTTACTTTTTTCCAACTCACTCAGACCGTCAAGAAGAAAATATATGGATTAATAT
GCATTATATTGAAAATGTTAAAGAACTTAAAAATCGTAAGAGTAAAATAATTTTTGCGAATGGTGATTCGTTAACGCTCA
ATGTATCATTTCATAGCTTGTGGCATCAATATACGAATGCAATCATCTATTATTACATGGTAGATAAGCAATCACGAATG
AAATCTAACAACCCTGAACAACCCATTGACTATAATCAGTCTTCTCTAAATATTTTCGAGGCGCTCTCACGCTACTCCCT
TTTTGAAGAAAATTAG

Domains

Predicted by InterproScan.

ComK protein (ComK)

(7-158)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comK/comK1 Staphylococcus aureus MW2

76.757

96.859

0.743
  comK/comK1 Staphylococcus aureus N315

76.757

96.859

0.743