Detailed information    

insolico Bioinformatically predicted

Overview

Name   dprA   Type   Machinery gene
Locus tag   QYE85_RS07480 Genome accession   NZ_CP129365
Coordinates   1592155..1593027 (-) Length   290 a.a.
NCBI ID   WP_002484839.1    Uniprot ID   A0A4Y7VXK4
Organism   Staphylococcus epidermidis strain CKFA-393     
Function   ssDNA binding; loading RecA onto ssDNA (predicted from homology)   
DNA processing

Related MGE

Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.

Gene-MGE association summary

MGE type MGE coordinates Gene coordinates Relative position Distance (bp)
ICE 1553698..1624506 1592155..1593027 within 0


Gene organization within MGE regions


Location: 1553698..1624506
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QYE85_RS07335 - 1554738..1556009 (-) 1272 WP_002439538.1 pitrilysin family protein -
  QYE85_RS07340 - 1556040..1556753 (-) 714 WP_002439536.1 GntR family transcriptional regulator -
  QYE85_RS07345 - 1556756..1559149 (-) 2394 WP_002439534.1 DNA translocase FtsK -
  QYE85_RS07350 - 1559415..1561088 (-) 1674 WP_002457357.1 ribonuclease J -
  QYE85_RS07355 pnp 1561456..1563561 (-) 2106 WP_001832554.1 polyribonucleotide nucleotidyltransferase -
  QYE85_RS07360 rpsO 1563693..1563962 (-) 270 WP_002439528.1 30S ribosomal protein S15 -
  QYE85_RS07365 - 1564082..1565053 (-) 972 WP_001832563.1 bifunctional riboflavin kinase/FAD synthetase -
  QYE85_RS07370 truB 1565069..1565986 (-) 918 WP_002456563.1 tRNA pseudouridine(55) synthase TruB -
  QYE85_RS07375 rbfA 1566124..1566474 (-) 351 WP_001829509.1 30S ribosome-binding factor RbfA -
  QYE85_RS07380 infB 1566777..1568939 (-) 2163 WP_002468903.1 translation initiation factor IF-2 -
  QYE85_RS07385 - 1568944..1569261 (-) 318 WP_002439520.1 YlxQ family RNA-binding protein -
  QYE85_RS07390 - 1569261..1569545 (-) 285 WP_001829465.1 YlxR family protein -
  QYE85_RS07395 nusA 1569563..1570786 (-) 1224 WP_002456565.1 transcription termination factor NusA -
  QYE85_RS07400 rimP 1570807..1571274 (-) 468 WP_002439519.1 ribosome maturation factor RimP -
  QYE85_RS07405 - 1571453..1575763 (-) 4311 WP_002456566.1 PolC-type DNA polymerase III -
  QYE85_RS07410 - 1576013..1577716 (-) 1704 WP_001829513.1 proline--tRNA ligase -
  QYE85_RS07415 rseP 1577735..1579021 (-) 1287 WP_301557875.1 RIP metalloprotease RseP -
  QYE85_RS07420 - 1579255..1580037 (-) 783 WP_001829499.1 phosphatidate cytidylyltransferase -
  QYE85_RS07425 - 1580041..1580811 (-) 771 WP_001832561.1 isoprenyl transferase -
  QYE85_RS07430 frr 1581032..1581586 (-) 555 WP_001829472.1 ribosome recycling factor -
  QYE85_RS07435 pyrH 1581603..1582325 (-) 723 WP_002439511.1 UMP kinase -
  QYE85_RS07440 tsf 1582466..1583344 (-) 879 WP_002439509.1 translation elongation factor Ts -
  QYE85_RS07445 rpsB 1583496..1584284 (-) 789 WP_001832557.1 30S ribosomal protein S2 -
  QYE85_RS07450 codY 1584647..1585417 (-) 771 WP_002439506.1 GTP-sensing pleiotropic transcriptional regulator CodY -
  QYE85_RS07455 hslU 1585441..1586844 (-) 1404 WP_001829474.1 ATP-dependent protease ATPase subunit HslU -
  QYE85_RS07460 hslV 1586913..1587455 (-) 543 WP_001829498.1 ATP-dependent protease subunit HslV -
  QYE85_RS07465 xerC 1587459..1588349 (-) 891 WP_002456225.1 tyrosine recombinase XerC -
  QYE85_RS07470 trmFO 1588574..1589881 (-) 1308 WP_001832560.1 FADH(2)-oxidizing methylenetetrahydrofolate--tRNA-(uracil(54)-C(5))- methyltransferase TrmFO -
  QYE85_RS07475 topA 1589906..1591972 (-) 2067 WP_151520550.1 type I DNA topoisomerase -
  QYE85_RS07480 dprA 1592155..1593027 (-) 873 WP_002484839.1 DNA-processing protein DprA Machinery gene
  QYE85_RS07485 - 1593367..1593582 (-) 216 Protein_1443 transposase -
  QYE85_RS07490 sucD 1593832..1594740 (-) 909 WP_002446283.1 succinate--CoA ligase subunit alpha -
  QYE85_RS07495 sucC 1594762..1595928 (-) 1167 WP_002439496.1 ADP-forming succinate--CoA ligase subunit beta -
  QYE85_RS07500 - 1596036..1596806 (-) 771 WP_001829514.1 ribonuclease HII -
  QYE85_RS07505 ylqF 1596811..1597674 (-) 864 WP_002468554.1 ribosome biogenesis GTPase YlqF -
  QYE85_RS07510 - 1598003..1600603 (+) 2601 WP_010959172.1 YfhO family protein -
  QYE85_RS07515 - 1600596..1603199 (+) 2604 WP_020368058.1 YfhO family protein -
  QYE85_RS07520 rplS 1603729..1604079 (-) 351 WP_002436293.1 50S ribosomal protein L19 -
  QYE85_RS07525 trmD 1604185..1604922 (-) 738 WP_002494426.1 tRNA (guanosine(37)-N1)-methyltransferase TrmD -
  QYE85_RS07530 rimM 1604922..1605425 (-) 504 WP_001832559.1 ribosome maturation factor RimM -
  QYE85_RS07535 rpsP 1605552..1605827 (-) 276 WP_002439483.1 30S ribosomal protein S16 -
  QYE85_RS07540 ffh 1606135..1607502 (-) 1368 WP_001830113.1 signal recognition particle protein -
  QYE85_RS07545 - 1607533..1607865 (-) 333 WP_002457379.1 putative DNA-binding protein -
  QYE85_RS07550 ftsY 1607867..1609093 (-) 1227 WP_001830080.1 signal recognition particle-docking protein FtsY -
  QYE85_RS07555 smc 1609090..1612659 (-) 3570 WP_002502436.1 chromosome segregation protein SMC -
  QYE85_RS07560 rnc 1612786..1613523 (-) 738 WP_049385551.1 ribonuclease III -
  QYE85_RS07565 - 1613638..1613871 (-) 234 WP_001830184.1 acyl carrier protein -
  QYE85_RS07570 fabG 1614035..1614769 (-) 735 WP_001830161.1 3-oxoacyl-[acyl-carrier-protein] reductase -
  QYE85_RS07575 fabD 1614762..1615688 (-) 927 WP_001830062.1 ACP S-malonyltransferase -
  QYE85_RS07580 plsX 1615690..1616667 (-) 978 WP_001830112.1 phosphate acyltransferase PlsX -
  QYE85_RS07585 fapR 1616669..1617229 (-) 561 WP_001830099.1 transcription factor FapR -
  QYE85_RS07590 recG 1617388..1619436 (-) 2049 WP_001830069.1 ATP-dependent DNA helicase RecG -
  QYE85_RS07595 fakA 1619640..1621298 (-) 1659 WP_001830116.1 fatty acid kinase catalytic subunit FakA -
  QYE85_RS07600 - 1621313..1621687 (-) 375 WP_001830156.1 Asp23/Gls24 family envelope stress response protein -
  QYE85_RS07605 rpmB 1622045..1622233 (+) 189 WP_001830107.1 50S ribosomal protein L28 -
  QYE85_RS07610 - 1622316..1622951 (-) 636 WP_049385552.1 thiamine diphosphokinase -
  QYE85_RS07615 rpe 1622956..1623600 (-) 645 WP_001830173.1 ribulose-phosphate 3-epimerase -
  QYE85_RS07620 rsgA 1623601..1624476 (-) 876 WP_001830137.1 ribosome small subunit-dependent GTPase A -

Sequence

Protein


Download         Length: 290 a.a.        Molecular weight: 33717.61 Da        Isoelectric Point: 9.3616

>NTDB_id=852828 QYE85_RS07480 WP_002484839.1 1592155..1593027(-) (dprA) [Staphylococcus epidermidis strain CKFA-393]
MIQQTMLKLYWANFTTAQLHHLTSTYPDFLSENVFHQHDMIKRWLTERNSERLWNKYERFKELKLMDIIKEMKKANVSFT
TYFDDNYPSLCKEMYDYPYVIFYKGNPQFFNHSHSLAVIGSRNATQYTSQSLNYLFPSFRQLNMAIVSGLARGADSVAHQ
TALKYLLPTIGVLGFGHCYHYPKATLNLRTKVERNGLVISEYPPFSPISKHKFPERNRLISGLSRGVLITEAEERSGSQI
TIDCALEQNRNVYVLPGSMFNKMTKGNLRRINEGAQVVIDESSILYDYLF

Nucleotide


Download         Length: 873 bp        

>NTDB_id=852828 QYE85_RS07480 WP_002484839.1 1592155..1593027(-) (dprA) [Staphylococcus epidermidis strain CKFA-393]
TTGATACAACAGACGATGTTAAAACTATATTGGGCAAATTTCACTACGGCACAACTTCATCATCTTACAAGTACATATCC
TGACTTTCTATCAGAAAACGTATTTCATCAACATGACATGATAAAAAGGTGGCTTACAGAGCGTAATTCTGAAAGGCTAT
GGAACAAATATGAACGTTTCAAAGAATTAAAGCTGATGGACATTATTAAAGAAATGAAAAAAGCAAATGTTAGTTTTACA
ACATACTTTGATGATAACTACCCTTCTCTTTGCAAAGAAATGTATGATTATCCTTATGTGATATTCTACAAAGGAAATCC
ACAGTTCTTTAATCATTCTCACTCTTTAGCTGTAATTGGCTCACGTAATGCCACACAATATACAAGTCAATCTTTAAACT
ATCTTTTTCCTTCATTTAGACAATTAAATATGGCGATTGTTTCTGGATTAGCGCGCGGTGCAGATAGTGTAGCACATCAA
ACCGCACTTAAATACCTATTACCAACTATTGGCGTACTTGGATTTGGCCATTGTTATCATTATCCTAAAGCAACCTTAAA
TTTAAGAACTAAAGTTGAAAGGAATGGCTTAGTGATAAGTGAATATCCACCATTTTCTCCTATAAGTAAGCATAAATTTC
CTGAAAGAAACAGGCTTATAAGTGGTCTGTCCAGAGGGGTACTTATAACTGAGGCTGAAGAAAGAAGTGGTAGTCAAATC
ACTATCGATTGTGCTTTAGAGCAAAATAGAAATGTTTATGTTCTACCTGGTTCAATGTTCAACAAAATGACTAAAGGTAA
TTTAAGAAGGATAAATGAAGGTGCTCAAGTTGTTATAGATGAAAGTAGTATATTATATGATTATCTATTTTAG

Domains

Predicted by InterproScan.

DNA recombination-mediator protein A (DNA_processg_A)

(72-279)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A4Y7VXK4

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  dprA Staphylococcus aureus MW2

56.944

99.31

0.566
  dprA Staphylococcus aureus N315

56.944

99.31

0.566