Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   QYE85_RS03740 Genome accession   NZ_CP129365
Coordinates   802237..802632 (+) Length   131 a.a.
NCBI ID   WP_002457121.1    Uniprot ID   A0A7H5C5S7
Organism   Staphylococcus epidermidis strain CKFA-393     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 797237..807632
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QYE85_RS03715 - 798656..799060 (+) 405 WP_001829924.1 F0F1 ATP synthase subunit epsilon -
  QYE85_RS03720 - 799209..799442 (+) 234 WP_002456242.1 DUF1146 family protein -
  QYE85_RS03725 murA 799552..800817 (+) 1266 WP_001829978.1 UDP-N-acetylglucosamine 1-carboxyvinyltransferase -
  QYE85_RS03730 fabZ 800851..801288 (+) 438 WP_001829953.1 3-hydroxyacyl-ACP dehydratase FabZ -
  QYE85_RS03735 - 801606..802046 (-) 441 WP_001829935.1 YwpF-like family protein -
  QYE85_RS03740 ssb 802237..802632 (+) 396 WP_002457121.1 single-stranded DNA-binding protein Machinery gene
  QYE85_RS03745 - 803020..803679 (+) 660 WP_001829904.1 transglycosylase family protein -
  QYE85_RS03750 tenA 803964..804653 (+) 690 WP_001829894.1 thiaminase II -
  QYE85_RS03755 thiD 804646..805467 (+) 822 WP_001832736.1 bifunctional hydroxymethylpyrimidine kinase/phosphomethylpyrimidine kinase -
  QYE85_RS03760 thiM 805460..806248 (+) 789 WP_001829971.1 hydroxyethylthiazole kinase -
  QYE85_RS03765 thiE 806254..806892 (+) 639 WP_002505076.1 thiamine phosphate synthase -

Sequence

Protein


Download         Length: 131 a.a.        Molecular weight: 15159.02 Da        Isoelectric Point: 5.2661

>NTDB_id=852810 QYE85_RS03740 WP_002457121.1 802237..802632(+) (ssb) [Staphylococcus epidermidis strain CKFA-393]
MLNKIVIVGRMTKDAQIYEKEDNKIATFCVATERNYKDDNNEISTDYLLCKAFGKTATNIEKYTSQGTLVGITGQMRSRK
YEKEGQTHFVTELYVETIKFMSPKNKNNETPSDNQFENNTYQPDDLEIIHI

Nucleotide


Download         Length: 396 bp        

>NTDB_id=852810 QYE85_RS03740 WP_002457121.1 802237..802632(+) (ssb) [Staphylococcus epidermidis strain CKFA-393]
ATGTTAAATAAAATAGTCATTGTTGGTAGAATGACGAAAGATGCTCAAATCTATGAAAAGGAGGATAACAAAATAGCAAC
ATTTTGCGTTGCTACAGAAAGAAACTACAAAGATGATAATAATGAAATTTCTACAGATTATTTACTTTGTAAAGCTTTCG
GTAAAACTGCCACTAATATTGAAAAGTACACTAGTCAAGGTACTTTAGTAGGTATAACTGGACAAATGCGTTCAAGAAAA
TATGAAAAAGAAGGCCAAACACATTTTGTTACAGAATTATACGTTGAAACAATAAAATTCATGTCCCCAAAAAATAAAAA
CAATGAAACTCCCTCTGATAATCAATTTGAAAACAACACTTATCAACCTGATGATTTAGAAATAATTCATATTTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(2-101)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A7H5C5S7

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Staphylococcus aureus N315

74.046

100

0.74
  ssb Staphylococcus aureus MW2

73.282

100

0.733