Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   QYE81_RS04140 Genome accession   NZ_CP129362
Coordinates   835864..836262 (+) Length   132 a.a.
NCBI ID   WP_016931212.1    Uniprot ID   A0A7Z1SCB7
Organism   Staphylococcus haemolyticus strain CCSH-121     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 830864..841262
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QYE81_RS04110 atpD 831140..832552 (+) 1413 WP_011275243.1 F0F1 ATP synthase subunit beta -
  QYE81_RS04115 - 832573..832974 (+) 402 WP_011275244.1 F0F1 ATP synthase subunit epsilon -
  QYE81_RS04120 - 833102..833335 (+) 234 WP_016931215.1 DUF1146 family protein -
  QYE81_RS04125 murA 833440..834705 (+) 1266 WP_016931214.1 UDP-N-acetylglucosamine 1-carboxyvinyltransferase -
  QYE81_RS04130 fabZ 834745..835182 (+) 438 WP_016931213.1 3-hydroxyacyl-ACP dehydratase FabZ -
  QYE81_RS04135 - 835233..835676 (-) 444 WP_011275248.1 YwpF-like family protein -
  QYE81_RS04140 ssb 835864..836262 (+) 399 WP_016931212.1 single-stranded DNA-binding protein Machinery gene
  QYE81_RS04145 - 836601..837308 (+) 708 WP_011275250.1 transglycosylase family protein -
  QYE81_RS04150 tenA 837597..838286 (+) 690 WP_011275251.1 thiaminase II -
  QYE81_RS04155 thiD 838279..839100 (+) 822 WP_016931211.1 bifunctional hydroxymethylpyrimidine kinase/phosphomethylpyrimidine kinase -
  QYE81_RS04160 thiM 839093..839884 (+) 792 WP_016931210.1 hydroxyethylthiazole kinase -
  QYE81_RS04165 thiE 839886..840524 (+) 639 WP_011275254.1 thiamine phosphate synthase -

Sequence

Protein


Download         Length: 132 a.a.        Molecular weight: 15189.13 Da        Isoelectric Point: 4.9684

>NTDB_id=852777 QYE81_RS04140 WP_016931212.1 835864..836262(+) (ssb) [Staphylococcus haemolyticus strain CCSH-121]
MLNKIVIVGRLTKKAQIFENEEVKIATFCVATERNYKDENNEIACDYIFCKAFGKTATNIESYTDQGTLVGITGQMRSRK
YDKDGQTHFVTELYVETIKFMSPKSKNYNILPNTSYDEDAYSFDHLEVIDVN

Nucleotide


Download         Length: 399 bp        

>NTDB_id=852777 QYE81_RS04140 WP_016931212.1 835864..836262(+) (ssb) [Staphylococcus haemolyticus strain CCSH-121]
ATGCTAAATAAAATTGTGATAGTAGGTCGATTGACCAAAAAGGCACAAATATTTGAAAACGAGGAGGTGAAAATAGCTAC
GTTCTGTGTTGCAACTGAACGTAATTATAAAGATGAAAATAATGAAATAGCTTGTGATTATATTTTTTGTAAGGCATTTG
GTAAAACAGCAACAAATATAGAATCATATACAGACCAAGGCACTTTAGTTGGTATTACAGGACAAATGAGATCTCGTAAG
TACGATAAAGATGGCCAAACGCACTTTGTGACTGAATTATATGTTGAAACAATTAAATTTATGTCCCCTAAATCTAAAAA
TTATAATATTCTTCCTAACACCTCATATGATGAAGACGCTTATTCCTTTGATCACCTTGAAGTGATTGATGTTAACTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(2-101)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A7Z1SCB7

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Staphylococcus aureus N315

75.573

99.242

0.75
  ssb Staphylococcus aureus MW2

74.809

99.242

0.742