Detailed information    

insolico Bioinformatically predicted

Overview

Name   sigH   Type   Regulator
Locus tag   QYE86_RS03350 Genome accession   NZ_CP129360
Coordinates   641440..641976 (+) Length   178 a.a.
NCBI ID   WP_044288615.1    Uniprot ID   -
Organism   Staphylococcus aureus strain CKMM-401M     
Function   promote expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 636440..646976
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QYE86_RS03325 cysE 637620..638267 (+) 648 WP_001805237.1 serine O-acetyltransferase -
  QYE86_RS03330 cysS 638251..639651 (+) 1401 WP_000631963.1 cysteine--tRNA ligase -
  QYE86_RS03335 - 639644..640048 (+) 405 WP_000370182.1 Mini-ribonuclease 3 -
  QYE86_RS03340 rlmB 640056..640802 (+) 747 WP_000390332.1 23S rRNA (guanosine(2251)-2'-O)-methyltransferase RlmB -
  QYE86_RS03345 - 640802..641326 (+) 525 WP_044288614.1 NYN domain-containing protein -
  QYE86_RS03350 sigH 641440..641976 (+) 537 WP_044288615.1 sigma-70 family RNA polymerase sigma factor Regulator
  QYE86_RS03355 rpmG 642091..642234 (+) 144 WP_001788193.1 50S ribosomal protein L33 -
  QYE86_RS03360 secE 642290..642472 (+) 183 WP_001074473.1 preprotein translocase subunit SecE -
  QYE86_RS03365 nusG 642485..643033 (+) 549 WP_001288302.1 transcription termination/antitermination protein NusG -
  QYE86_RS03370 rplK 643214..643636 (+) 423 WP_001085792.1 50S ribosomal protein L11 -
  QYE86_RS03375 rplA 643844..644536 (+) 693 WP_001074619.1 50S ribosomal protein L1 -
  QYE86_RS03380 rplJ 644808..645308 (+) 501 WP_001273085.1 50S ribosomal protein L10 -
  QYE86_RS03385 rplL 645351..645719 (+) 369 WP_001273586.1 50S ribosomal protein L7/L12 -
  QYE86_RS03390 - 645894..646502 (+) 609 WP_000020304.1 class I SAM-dependent methyltransferase -

Sequence

Protein


Download         Length: 178 a.a.        Molecular weight: 21831.59 Da        Isoelectric Point: 9.7241

>NTDB_id=852730 QYE86_RS03350 WP_044288615.1 641440..641976(+) (sigH) [Staphylococcus aureus strain CKMM-401M]
MKRNNAINDKDFEKLVMDLQPLIIRRIKTFGFNHYDLEDLYQEILIRMYRSVQTFDFSGEQPFTNYVQCLITSVKYDYLR
KYLATNKRMDNLINEYRVTYPCAIKRYDVENNYLNKLAIKELIRQFKYLSAFEKDVMYLMCEQYKPREIAQLMHVKEKVI
YNAIQRCKNKIKRYFKMI

Nucleotide


Download         Length: 537 bp        

>NTDB_id=852730 QYE86_RS03350 WP_044288615.1 641440..641976(+) (sigH) [Staphylococcus aureus strain CKMM-401M]
ATCAAACGTAACAATGCAATAAATGATAAAGACTTCGAAAAGTTAGTAATGGATCTACAACCATTAATTATTCGACGCAT
CAAAACATTTGGATTTAATCATTATGATTTAGAAGACTTATATCAAGAAATACTTATACGGATGTATAGGTCGGTCCAAA
CATTTGATTTTAGTGGAGAGCAGCCTTTCACAAATTATGTTCAATGTTTAATTACGTCTGTAAAGTATGATTATTTGAGA
AAATATTTAGCTACAAATAAAAGAATGGATAATTTGATTAATGAATATAGAGTTACGTATCCATGTGCAATAAAGCGTTA
TGATGTTGAAAACAATTATTTGAATAAATTAGCAATTAAAGAGTTGATTCGTCAGTTTAAGTATTTGAGTGCATTTGAAA
AAGATGTCATGTATTTAATGTGTGAACAATATAAGCCGAGAGAAATTGCTCAACTGATGCATGTAAAAGAGAAAGTGATT
TATAATGCCATACAACGATGTAAAAATAAAATAAAACGTTATTTCAAAATGATTTGA

Domains

Predicted by InterproScan.

Sigma-70 region 2 (Sigma70_r2)

(15-81)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sigH Staphylococcus aureus MW2

98.876

100

0.989
  sigH Staphylococcus aureus N315

97.753

100

0.978