Detailed information    

insolico Bioinformatically predicted

Overview


Name   comP   Type   Regulator
Locus tag   QYM22_RS19215 Genome accession   NZ_CP129342
Coordinates   3650915..3653233 (-) Length   772 a.a.
NCBI ID   WP_065894683.1    Uniprot ID   -
Organism   Bacillus glycinifermentans strain SRCM12603     
Function   phosphorylation of ComA (predicted from homology)   
Competence regulation

Genomic Context


Location: 3645915..3658233
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QYM22_RS19175 (QYM22_19175) - 3646373..3646804 (+) 432 WP_046131682.1 Na(+)/H(+) antiporter subunit B -
  QYM22_RS19180 (QYM22_19180) - 3646804..3647145 (+) 342 WP_046131683.1 Na(+)/H(+) antiporter subunit C -
  QYM22_RS19185 (QYM22_19185) - 3647138..3648616 (+) 1479 WP_046131684.1 Na+/H+ antiporter subunit D -
  QYM22_RS19190 (QYM22_19190) - 3648622..3649098 (+) 477 WP_046131685.1 Na+/H+ antiporter subunit E -
  QYM22_RS19195 (QYM22_19195) - 3649098..3649382 (+) 285 WP_046131686.1 Na(+)/H(+) antiporter subunit F1 -
  QYM22_RS19200 (QYM22_19200) mnhG 3649366..3649740 (+) 375 WP_046131687.1 monovalent cation/H(+) antiporter subunit G -
  QYM22_RS19205 (QYM22_19205) - 3649782..3650174 (-) 393 WP_046131688.1 hotdog fold thioesterase -
  QYM22_RS19210 (QYM22_19210) comA 3650194..3650832 (-) 639 WP_046131689.1 response regulator transcription factor Regulator
  QYM22_RS19215 (QYM22_19215) comP 3650915..3653233 (-) 2319 WP_065894683.1 ATP-binding protein Regulator
  QYM22_RS19220 (QYM22_19220) comX 3653274..3653438 (-) 165 WP_046131691.1 competence pheromone ComX -
  QYM22_RS19225 (QYM22_19225) - 3653449..3654321 (-) 873 WP_046131716.1 polyprenyl synthetase family protein -
  QYM22_RS19230 (QYM22_19230) degQ 3654511..3654651 (-) 141 WP_046131692.1 degradation enzyme regulation protein DegQ Regulator
  QYM22_RS19235 (QYM22_19235) - 3655144..3655491 (+) 348 WP_231947384.1 hypothetical protein -
  QYM22_RS19240 (QYM22_19240) - 3655542..3656759 (-) 1218 WP_046131693.1 HDOD domain-containing protein -

Sequence


Protein


Download         Length: 772 a.a.        Molecular weight: 88954.06 Da        Isoelectric Point: 6.0352

>NTDB_id=852507 QYM22_RS19215 WP_065894683.1 3650915..3653233(-) (comP) [Bacillus glycinifermentans strain SRCM12603]
MNVNYNKLSLIIILISLAFVPYIIYVNLHSSYLGMTMEFNAKNEYQVFQIEKGSLAQSLGFKNGDIIREINGKNVDKLKS
NEEELEKELNDVKSLIVERDGEIGLVETGYELLSYESFFLFIIPMIFYLLSLFCVYFIIKSNKKLNAASAFILIVFLLVT
STSYSSSVGAAKGDNLSVYVTMITFQFVPVLYLHYIYQYFKEKGKVFFSNKIFLFLYPVGVLNLLVEIFSDTLEISYSSI
KSFNLISFLLITTIAFSLIIYGLIKYKYSEQAYFLRILVITNFVAFIPFLIFYVIPYVFIGDYIFQAMFVVPFLLIIPFS
LVYQFVATKIYDIDFLLGRFRYYGLLAILPTLISVGVITLTQEISNSFNTIKITIFIYFIMLGVFYLKEILDFHFRLKRF
SEKFNYQDSIFKFTQMIRSSTSLSEVFRELANTILDVLLVSQAYVLELKNDGTVRLLSDDVNDHVWKPYEKDAVKAVTEI
GKIVEVDRGFLIKIGERGGTSYVMLCLSILNTPRLTRDEISWLETLAFYTSVSLENVLKIGELMEHLENVKKEGPNPAWL
NKLMFAIEEKQRSDLARDLHDSVLQDMISLKHQSEMFLADFEKDKVCTAEIEQRLVNMNEQMSNVIQMTRETCQELRPQL
LYDLGLVKALSKLAAQHQESSSIRIRLNTERFSKVLDLDTQLNLYRIVQELLSNAVKHSKAHEVLVMLVCIKEKVVLHYE
DDGIGFDQDKLYQNSSSMGLSGIRERVRALNGKLDIKTAEGKGFKVIIEMEL

Nucleotide


Download         Length: 2319 bp        

>NTDB_id=852507 QYM22_RS19215 WP_065894683.1 3650915..3653233(-) (comP) [Bacillus glycinifermentans strain SRCM12603]
ATGAATGTTAATTATAATAAACTCTCTTTAATCATAATTTTAATAAGTTTAGCGTTTGTTCCTTATATTATTTATGTAAA
CCTTCATTCGAGCTACCTTGGAATGACAATGGAGTTTAATGCGAAAAATGAGTATCAAGTTTTTCAAATTGAAAAGGGAT
CATTAGCACAATCACTTGGATTCAAAAACGGCGATATTATTAGAGAAATAAATGGAAAAAACGTTGATAAATTAAAATCA
AATGAAGAAGAGTTAGAGAAAGAATTAAATGATGTTAAATCATTGATTGTGGAAAGGGATGGGGAGATCGGTTTAGTAGA
AACTGGATATGAACTGTTGAGTTATGAAAGTTTCTTTTTATTTATTATTCCAATGATCTTTTATCTTCTATCTCTCTTTT
GTGTTTATTTTATAATAAAATCTAATAAAAAATTAAACGCGGCTTCGGCTTTTATTTTGATTGTATTTCTCTTAGTAACT
TCAACATCTTATTCTTCTTCAGTGGGAGCTGCAAAAGGGGATAACCTTAGTGTTTATGTCACGATGATAACTTTTCAATT
TGTCCCTGTATTATATCTTCATTATATTTATCAATACTTTAAGGAAAAAGGAAAGGTGTTTTTTAGTAATAAGATATTTC
TTTTTCTATACCCTGTGGGTGTATTGAATTTATTAGTCGAGATTTTCAGTGACACTTTAGAGATATCCTATAGTTCTATT
AAAAGTTTTAACTTGATCTCATTCTTGCTTATTACGACTATAGCATTTTCATTAATCATTTATGGTTTAATTAAATATAA
GTATTCTGAACAAGCTTATTTTTTACGTATTCTGGTTATAACAAATTTTGTTGCGTTTATTCCATTTTTGATATTCTACG
TCATCCCTTATGTGTTTATTGGCGATTATATATTTCAGGCAATGTTTGTTGTTCCTTTTTTATTAATTATTCCTTTTTCG
CTTGTTTATCAGTTTGTTGCCACTAAGATATATGATATCGATTTTTTATTAGGACGATTTAGATATTACGGGTTGCTAGC
TATATTGCCTACTCTTATTTCTGTAGGTGTAATTACCTTAACCCAAGAGATTAGCAACAGTTTTAATACAATTAAAATAA
CAATTTTTATATATTTTATCATGCTAGGTGTTTTTTATCTAAAGGAAATTCTTGATTTTCACTTCCGATTAAAGAGATTT
TCTGAAAAATTTAATTATCAGGACAGTATTTTTAAATTTACACAAATGATCCGAAGCTCAACATCTTTATCAGAAGTTTT
TAGAGAATTAGCTAACACAATCCTTGATGTATTACTTGTTAGCCAAGCATATGTCCTTGAATTAAAAAATGATGGAACAG
TGAGACTGCTTAGTGATGATGTGAATGATCATGTTTGGAAGCCATATGAAAAAGATGCTGTCAAAGCCGTCACCGAAATC
GGCAAAATCGTCGAAGTCGACCGCGGGTTTCTCATTAAAATCGGTGAACGGGGCGGGACGTCTTATGTCATGTTGTGCCT
GTCGATTTTAAATACGCCTAGGCTGACCCGTGATGAGATTTCGTGGCTTGAGACGCTGGCATTTTATACGAGCGTTTCCT
TGGAAAACGTTCTGAAGATCGGCGAGCTGATGGAACATCTTGAGAATGTGAAAAAGGAAGGGCCGAATCCGGCATGGCTG
AATAAGCTGATGTTTGCGATCGAGGAGAAGCAGAGGTCCGATTTGGCGAGGGATTTACACGATTCGGTGCTTCAGGATAT
GATTTCTTTGAAGCATCAAAGCGAGATGTTTCTTGCCGATTTTGAAAAAGATAAAGTGTGCACGGCCGAAATTGAGCAAA
GGCTGGTCAATATGAATGAGCAAATGTCGAATGTGATCCAGATGACGAGGGAGACGTGCCAGGAGCTGAGACCGCAGCTA
TTGTACGATCTCGGCCTCGTTAAAGCACTCTCCAAACTGGCGGCGCAGCATCAGGAATCCTCTTCGATTCGGATCAGATT
AAACACGGAAAGGTTTTCAAAAGTGCTTGATCTCGATACACAGCTGAATCTGTACAGAATCGTCCAGGAACTTTTGAGCA
ACGCAGTGAAACATTCGAAGGCGCATGAGGTTTTGGTTATGCTCGTTTGCATTAAGGAAAAAGTCGTGCTCCATTATGAA
GATGACGGCATCGGTTTTGATCAGGACAAGCTTTATCAAAACAGCTCCAGTATGGGGCTGTCGGGAATTCGCGAGCGCGT
CCGCGCATTGAACGGTAAACTGGACATTAAAACAGCAGAGGGAAAAGGATTCAAGGTCATCATTGAAATGGAATTGTAA


Secondary structure


Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure


Source ID Structure

Transmembrane helices


Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.



Visualization of predicted probability:


Similar proteins


Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comP Bacillus subtilis subsp. subtilis str. 168

53.368

100

0.534