Detailed information    

insolico Bioinformatically predicted

Overview

Name   comA   Type   Regulator
Locus tag   QYM22_RS19210 Genome accession   NZ_CP129342
Coordinates   3650194..3650832 (-) Length   212 a.a.
NCBI ID   WP_046131689.1    Uniprot ID   -
Organism   Bacillus glycinifermentans strain SRCM12603     
Function   promoting transcription of comS (predicted from homology)   
Competence regulation

Genomic Context

Location: 3645194..3655832
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QYM22_RS19175 (QYM22_19175) - 3646373..3646804 (+) 432 WP_046131682.1 Na(+)/H(+) antiporter subunit B -
  QYM22_RS19180 (QYM22_19180) - 3646804..3647145 (+) 342 WP_046131683.1 Na(+)/H(+) antiporter subunit C -
  QYM22_RS19185 (QYM22_19185) - 3647138..3648616 (+) 1479 WP_046131684.1 Na+/H+ antiporter subunit D -
  QYM22_RS19190 (QYM22_19190) - 3648622..3649098 (+) 477 WP_046131685.1 Na+/H+ antiporter subunit E -
  QYM22_RS19195 (QYM22_19195) - 3649098..3649382 (+) 285 WP_046131686.1 Na(+)/H(+) antiporter subunit F1 -
  QYM22_RS19200 (QYM22_19200) mnhG 3649366..3649740 (+) 375 WP_046131687.1 monovalent cation/H(+) antiporter subunit G -
  QYM22_RS19205 (QYM22_19205) - 3649782..3650174 (-) 393 WP_046131688.1 hotdog fold thioesterase -
  QYM22_RS19210 (QYM22_19210) comA 3650194..3650832 (-) 639 WP_046131689.1 response regulator transcription factor Regulator
  QYM22_RS19215 (QYM22_19215) comP 3650915..3653233 (-) 2319 WP_065894683.1 ATP-binding protein Regulator
  QYM22_RS19220 (QYM22_19220) comX 3653274..3653438 (-) 165 WP_046131691.1 competence pheromone ComX -
  QYM22_RS19225 (QYM22_19225) - 3653449..3654321 (-) 873 WP_046131716.1 polyprenyl synthetase family protein -
  QYM22_RS19230 (QYM22_19230) degQ 3654511..3654651 (-) 141 WP_046131692.1 degradation enzyme regulation protein DegQ Regulator
  QYM22_RS19235 (QYM22_19235) - 3655144..3655491 (+) 348 WP_231947384.1 hypothetical protein -

Sequence

Protein


Download         Length: 212 a.a.        Molecular weight: 24140.51 Da        Isoelectric Point: 4.6583

>NTDB_id=852506 QYM22_RS19210 WP_046131689.1 3650194..3650832(-) (comA) [Bacillus glycinifermentans strain SRCM12603]
MRRLLVIDDHPAVMEGTKAILETNQDFLVDCLSPEASEQFLTKHDFSAYDLILMDLNLGEINGMDLSKKILETCSSCKII
VYTGYEVEDYFEEAIRSGMHGAISKTESKEKIIEYIYQVLDNKIVVDYDYLKDLITKQKTKSSSQETQHDVLTERERLIL
KEVEKGYTNQEIADALHLSKRSIEYSLTSVFNKLNVGSRTEAVLIAKSEGVL

Nucleotide


Download         Length: 639 bp        

>NTDB_id=852506 QYM22_RS19210 WP_046131689.1 3650194..3650832(-) (comA) [Bacillus glycinifermentans strain SRCM12603]
ATGAGAAGATTACTTGTGATCGATGATCATCCGGCTGTCATGGAGGGGACAAAGGCAATTCTTGAAACGAATCAGGATTT
TCTTGTCGATTGCCTCAGTCCGGAAGCCAGCGAACAATTTCTGACTAAACATGATTTTTCTGCATATGACCTGATCTTAA
TGGATTTGAATCTGGGCGAAATCAACGGAATGGACCTCTCCAAGAAAATCCTTGAGACCTGTTCATCATGCAAAATTATC
GTTTATACCGGATACGAAGTAGAAGATTATTTTGAAGAAGCGATTCGTTCCGGCATGCATGGTGCGATCAGCAAAACAGA
GTCAAAGGAAAAGATTATTGAGTACATATATCAGGTGTTGGATAATAAAATCGTCGTCGATTATGATTACTTAAAAGATC
TGATCACCAAGCAAAAAACAAAATCAAGCAGCCAAGAGACCCAGCATGACGTATTGACTGAAAGAGAACGCCTGATCTTA
AAAGAGGTCGAAAAAGGCTATACGAATCAGGAGATTGCCGATGCGCTGCATCTGAGCAAACGTTCGATCGAATACAGCCT
GACTTCCGTATTTAACAAACTGAATGTCGGATCACGTACGGAAGCTGTATTGATCGCAAAATCCGAAGGCGTACTTTAA

Domains

Predicted by InterproScan.

Bacterial regulatory proteins, luxR family (GerE)

(150-206)

Response regulator receiver domain (Response_reg)

(5-116)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comA Bacillus subtilis subsp. subtilis str. 168

75.701

100

0.764