Detailed information    

insolico Bioinformatically predicted

Overview

Name   recN   Type   Machinery gene
Locus tag   QYM22_RS14780 Genome accession   NZ_CP129342
Coordinates   2831114..2832844 (-) Length   576 a.a.
NCBI ID   WP_046131873.1    Uniprot ID   A0AAJ3Z1R4
Organism   Bacillus glycinifermentans strain SRCM12603     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2826114..2837844
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QYM22_RS14765 (QYM22_14765) - 2826897..2827811 (+) 915 WP_046131869.1 class I SAM-dependent methyltransferase -
  QYM22_RS14770 (QYM22_14770) spo0A 2828537..2829337 (-) 801 WP_046131871.1 sporulation transcription factor Spo0A Regulator
  QYM22_RS14775 (QYM22_14775) spoIVB 2829627..2830943 (-) 1317 WP_046131872.1 SpoIVB peptidase -
  QYM22_RS14780 (QYM22_14780) recN 2831114..2832844 (-) 1731 WP_046131873.1 DNA repair protein RecN Machinery gene
  QYM22_RS14785 (QYM22_14785) argR 2832875..2833324 (-) 450 WP_046131874.1 transcriptional regulator ArgR -
  QYM22_RS14790 (QYM22_14790) - 2833431..2834276 (-) 846 WP_046131875.1 TlyA family RNA methyltransferase -
  QYM22_RS14795 (QYM22_14795) dxs 2834273..2836174 (-) 1902 WP_046131897.1 1-deoxy-D-xylulose-5-phosphate synthase -
  QYM22_RS14800 (QYM22_14800) - 2836440..2837330 (-) 891 WP_046131876.1 polyprenyl synthetase family protein -
  QYM22_RS14805 (QYM22_14805) - 2837320..2837580 (-) 261 WP_046131877.1 exodeoxyribonuclease VII small subunit -

Sequence

Protein


Download         Length: 576 a.a.        Molecular weight: 64498.38 Da        Isoelectric Point: 4.8047

>NTDB_id=852488 QYM22_RS14780 WP_046131873.1 2831114..2832844(-) (recN) [Bacillus glycinifermentans strain SRCM12603]
MLAELSIKNFAIIEELTISFEKGLTVLTGETGAGKSIIIDAISLLVGGRGSSEFVRYGEKRAELEGLFLLDEGHPVFDMC
RELGIEASDGMIVMRRDINANGKSICRVNGKLVTIAALREVGRLLLDIHGQHDNQLLMEDDHHLELLDRYAGEEIEKALK
AYQEVYGRYMNVMNKVKQLSESEQEMAHRLDLIQFQLDEIESANLEPKEDELLEEERRQISNFEKIYEALQNAYNALRNE
QAGLDWVGMASSELENVSGINDGLKKISESVANAYYTLEDSTFQIRNMLDELEYDPARLDFIESRLNEIKQLKRKYGATV
EDIQAYSAKIEEEIDRIQNRDSHLQALKEELESVGQDVAIEAMNVSEIRKAWAKKLAKDIHRELKELYMEKSTFDTEFEI
KTADAREVAPVVNGTPVHLTKQGVDTVRFLISTNTGEPLKSLSKVASGGELSRIMLAMKSIFSAQQDVTSIIFDEVDTGV
SGRVAQAIAEKIHRVSIGSQVLCITHLPQVAAMADTHLLITKQSKDGRTTTSVTPLSKQEKISEIGRMIAGVEVTDLTKR
HAKELLQQAKLVKTTG

Nucleotide


Download         Length: 1731 bp        

>NTDB_id=852488 QYM22_RS14780 WP_046131873.1 2831114..2832844(-) (recN) [Bacillus glycinifermentans strain SRCM12603]
TTGTTAGCTGAATTATCGATCAAGAACTTTGCGATTATCGAAGAACTAACGATTTCTTTTGAAAAAGGACTGACGGTTTT
GACCGGTGAAACCGGCGCCGGAAAATCAATCATTATCGATGCGATTTCGCTGCTCGTCGGCGGCAGAGGATCATCGGAAT
TTGTCAGATACGGAGAAAAACGGGCGGAATTGGAAGGGCTCTTTCTGCTGGATGAGGGGCATCCGGTTTTTGATATGTGC
AGGGAGCTCGGAATCGAAGCATCAGACGGCATGATCGTGATGAGGCGTGACATTAACGCCAACGGCAAAAGCATCTGCCG
TGTCAACGGAAAGCTCGTAACGATCGCCGCTCTGAGGGAAGTCGGAAGGCTTTTACTCGACATCCACGGCCAGCACGATA
ACCAGCTTTTGATGGAAGACGATCATCACCTTGAGCTTTTGGACCGGTATGCCGGAGAGGAAATCGAAAAAGCGCTGAAA
GCGTATCAGGAAGTGTACGGCCGCTATATGAACGTCATGAACAAGGTCAAGCAGCTTTCTGAAAGCGAACAGGAAATGGC
TCACAGACTCGACTTGATCCAATTTCAGCTTGACGAAATCGAATCTGCAAATCTCGAGCCGAAAGAGGACGAGCTTTTAG
AAGAAGAGCGCCGGCAGATTTCCAACTTTGAGAAAATATACGAAGCTTTGCAAAATGCCTACAATGCGCTTCGCAATGAG
CAGGCGGGCCTCGATTGGGTCGGCATGGCTTCAAGCGAGCTTGAGAACGTGTCTGGCATCAATGACGGACTGAAGAAAAT
ATCCGAATCCGTCGCAAACGCCTACTACACGCTGGAAGACTCGACGTTTCAAATCAGAAACATGCTCGACGAATTGGAAT
ACGACCCTGCCCGCCTCGATTTCATTGAATCCCGCCTGAACGAAATTAAACAGCTGAAGCGGAAATACGGAGCCACAGTT
GAAGATATTCAAGCCTATTCGGCTAAAATCGAAGAAGAAATCGACCGCATTCAAAACCGGGACAGCCACTTGCAGGCTTT
AAAAGAGGAGCTTGAGTCGGTCGGCCAGGATGTCGCGATCGAAGCGATGAATGTGTCAGAGATCAGAAAAGCATGGGCGA
AAAAACTCGCCAAAGATATTCACCGCGAACTAAAAGAGCTGTACATGGAAAAATCAACGTTCGATACCGAATTTGAGATC
AAAACAGCCGATGCCCGAGAAGTCGCGCCTGTTGTCAACGGAACGCCCGTTCACCTGACAAAGCAAGGCGTTGACACCGT
CCGCTTTTTGATTTCCACCAATACTGGAGAACCGCTGAAATCGTTGTCAAAAGTCGCTTCAGGCGGCGAATTGTCAAGGA
TTATGCTGGCGATGAAAAGCATTTTTTCCGCACAGCAGGACGTCACATCGATCATTTTTGACGAAGTGGATACTGGTGTA
AGCGGAAGGGTGGCGCAGGCGATCGCCGAGAAAATCCATCGCGTGTCGATCGGCTCTCAAGTGCTGTGCATCACCCATTT
GCCGCAGGTTGCAGCAATGGCGGACACGCACCTTTTGATTACGAAGCAGTCTAAAGACGGGAGAACGACGACAAGCGTCA
CCCCTTTGTCAAAACAGGAAAAAATATCGGAAATCGGCCGGATGATCGCCGGCGTCGAAGTCACGGATCTGACGAAACGC
CACGCAAAAGAGCTTTTGCAGCAGGCCAAACTCGTCAAAACGACCGGATAA

Domains

Predicted by InterproScan.

AAA domain (AAA_23)

(4-231)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recN Bacillus subtilis subsp. subtilis str. 168

80.729

100

0.807