Detailed information    

insolico Bioinformatically predicted

Overview

Name   spo0A   Type   Regulator
Locus tag   QYM22_RS14770 Genome accession   NZ_CP129342
Coordinates   2828537..2829337 (-) Length   266 a.a.
NCBI ID   WP_046131871.1    Uniprot ID   A0AAJ3Z019
Organism   Bacillus glycinifermentans strain SRCM12603     
Function   activation and repression of comK; repression of rok; repression of abrB (predicted from homology)   
Competence regulation

Genomic Context

Location: 2823537..2834337
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QYM22_RS14755 (QYM22_14755) - 2825543..2825797 (+) 255 WP_046131867.1 DUF2627 domain-containing protein -
  QYM22_RS14760 (QYM22_14760) - 2825832..2826557 (-) 726 WP_046131868.1 glycerophosphodiester phosphodiesterase -
  QYM22_RS14765 (QYM22_14765) - 2826897..2827811 (+) 915 WP_046131869.1 class I SAM-dependent methyltransferase -
  QYM22_RS14770 (QYM22_14770) spo0A 2828537..2829337 (-) 801 WP_046131871.1 sporulation transcription factor Spo0A Regulator
  QYM22_RS14775 (QYM22_14775) spoIVB 2829627..2830943 (-) 1317 WP_046131872.1 SpoIVB peptidase -
  QYM22_RS14780 (QYM22_14780) recN 2831114..2832844 (-) 1731 WP_046131873.1 DNA repair protein RecN Machinery gene
  QYM22_RS14785 (QYM22_14785) argR 2832875..2833324 (-) 450 WP_046131874.1 transcriptional regulator ArgR -
  QYM22_RS14790 (QYM22_14790) - 2833431..2834276 (-) 846 WP_046131875.1 TlyA family RNA methyltransferase -

Sequence

Protein


Download         Length: 266 a.a.        Molecular weight: 29566.11 Da        Isoelectric Point: 6.6109

>NTDB_id=852487 QYM22_RS14770 WP_046131871.1 2828537..2829337(-) (spo0A) [Bacillus glycinifermentans strain SRCM12603]
MEKIKVCVADDNRELVGLLSEYIEGQNDMEVIGVAYNGQECLSLFKDKEPDVLVLDIIMPHLDGLAVLERLRESQLKKQP
NVIMLTAFGQEDVTKKAVDLGASYFILKPFDIENLVGHIRQVSGNGSQMTHRAPSVQSSVLRPQPESPKKNLDASITSII
HEIGVPAHIKGYLYLREAISMVYNDIELLGSITKVLYPDIAKKFNTTASRVERAIRHAIEVAWSRGNIDSISSLFGYTVS
MSKAKPTNSEFIAMVADKLRLEHKAS

Nucleotide


Download         Length: 801 bp        

>NTDB_id=852487 QYM22_RS14770 WP_046131871.1 2828537..2829337(-) (spo0A) [Bacillus glycinifermentans strain SRCM12603]
GTGGAGAAAATTAAAGTATGTGTTGCTGATGATAACAGGGAGCTTGTCGGCCTATTAAGTGAATATATCGAGGGTCAAAA
CGACATGGAAGTGATCGGCGTGGCATATAACGGACAGGAATGTCTTTCTCTGTTTAAAGACAAGGAGCCTGACGTACTCG
TACTGGATATTATCATGCCTCATCTAGACGGATTGGCCGTTTTGGAAAGGCTGCGGGAATCTCAGCTTAAAAAACAGCCG
AACGTCATTATGCTGACTGCTTTCGGTCAGGAAGACGTAACGAAAAAAGCCGTGGATTTAGGCGCATCGTACTTCATTCT
GAAGCCGTTTGATATAGAAAATCTCGTCGGTCACATCCGCCAAGTCAGCGGAAACGGTTCTCAAATGACACACCGCGCCC
CTTCGGTTCAAAGCAGCGTCCTCCGGCCGCAGCCTGAATCGCCGAAGAAAAACCTGGACGCCAGCATCACGAGCATCATC
CACGAAATCGGCGTTCCCGCCCATATTAAAGGGTACCTATACTTGAGAGAAGCCATCTCCATGGTGTATAACGATATTGA
ACTGCTCGGAAGCATTACAAAAGTGCTGTATCCGGACATCGCCAAAAAATTCAACACGACCGCAAGCCGGGTCGAACGGG
CGATCCGCCACGCCATCGAAGTCGCATGGAGCAGAGGCAACATCGACTCCATTTCTTCTCTGTTCGGCTACACCGTCAGC
ATGTCAAAAGCAAAGCCGACGAACAGCGAATTCATCGCGATGGTCGCAGATAAGCTGCGGTTGGAGCATAAGGCTTCTTA
A

Domains

Predicted by InterproScan.

Sporulation initiation factor Spo0A C terminal (Spo0A_C)

(156-259)

Response regulator receiver domain (Response_reg)

(6-119)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  spo0A Bacillus subtilis subsp. subtilis str. 168

92.509

100

0.929