Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   QYH55_RS10435 Genome accession   NZ_CP129341
Coordinates   2174845..2175390 (-) Length   181 a.a.
NCBI ID   WP_273745411.1    Uniprot ID   A0AAQ2XL23
Organism   Ligilactobacillus ruminis strain SRCM218231     
Function   ssDNA binding (predicted from homology)   
DNA processing

Related MGE

Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.

Gene-MGE association summary

MGE type MGE coordinates Gene coordinates Relative position Distance (bp)
Prophage 2164880..2180502 2174845..2175390 within 0


Gene organization within MGE regions


Location: 2164880..2180502
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QYH55_RS10390 (QYH55_10390) - 2164880..2165107 (-) 228 WP_301558300.1 hypothetical protein -
  QYH55_RS10395 (QYH55_10395) dnaB 2165130..2166527 (-) 1398 WP_301558301.1 replicative DNA helicase -
  QYH55_RS10400 (QYH55_10400) rplI 2166561..2167010 (-) 450 WP_003695880.1 50S ribosomal protein L9 -
  QYH55_RS10405 (QYH55_10405) - 2167026..2169041 (-) 2016 WP_301558302.1 DHH family phosphoesterase -
  QYH55_RS10410 (QYH55_10410) pnuC 2169290..2170051 (-) 762 WP_273745414.1 nicotinamide riboside transporter PnuC -
  QYH55_RS10415 (QYH55_10415) - 2170316..2171317 (+) 1002 WP_046921539.1 DUF1002 domain-containing protein -
  QYH55_RS10420 (QYH55_10420) - 2171501..2172694 (-) 1194 WP_273745413.1 RNA-guided endonuclease TnpB family protein -
  QYH55_RS10425 (QYH55_10425) tnpA 2172694..2173092 (-) 399 WP_273745412.1 IS200/IS605 family transposase -
  QYH55_RS10430 (QYH55_10430) rpsR 2174588..2174824 (-) 237 WP_003695889.1 30S ribosomal protein S18 -
  QYH55_RS10435 (QYH55_10435) ssb 2174845..2175390 (-) 546 WP_273745411.1 single-stranded DNA-binding protein Machinery gene
  QYH55_RS10440 (QYH55_10440) rpsF 2175428..2175718 (-) 291 WP_003695891.1 30S ribosomal protein S6 -
  QYH55_RS10445 (QYH55_10445) gyrA 2175955..2178498 (-) 2544 WP_273747192.1 DNA gyrase subunit A -
  QYH55_RS10450 (QYH55_10450) gyrB 2178544..2180502 (-) 1959 WP_039122436.1 DNA topoisomerase (ATP-hydrolyzing) subunit B -

Sequence

Protein


Download         Length: 181 a.a.        Molecular weight: 19764.27 Da        Isoelectric Point: 4.9592

>NTDB_id=852454 QYH55_RS10435 WP_273745411.1 2174845..2175390(-) (ssb) [Ligilactobacillus ruminis strain SRCM218231]
MINRVVLVGRLTRDPDLRYTNSGTSVASFTVAVDRNFTNQQGNREADFINCVVWGKSAENFANFTHKGSLVGIEGRIQTR
SYENQQGNRVYVTEVVTENFSLLESKAESERYRAQHGGSASSAPRQQSQSSFGGNPYGSPANNQGSYQQDSGYGNGNNDA
MQDPFAGNGSKTDVSEDDLPF

Nucleotide


Download         Length: 546 bp        

>NTDB_id=852454 QYH55_RS10435 WP_273745411.1 2174845..2175390(-) (ssb) [Ligilactobacillus ruminis strain SRCM218231]
ATGATCAATAGAGTTGTTTTGGTTGGTCGTTTGACCAGAGACCCTGATTTGCGCTACACGAATTCAGGTACTTCAGTGGC
CAGTTTCACTGTTGCCGTCGATCGAAACTTCACTAACCAGCAAGGTAATCGTGAAGCAGATTTTATCAATTGTGTAGTAT
GGGGCAAATCCGCAGAGAATTTTGCCAACTTCACGCATAAGGGTTCGCTTGTCGGGATTGAAGGGCGCATCCAAACGCGT
TCTTACGAAAATCAGCAAGGGAATCGCGTGTATGTGACTGAAGTCGTTACGGAAAACTTCTCGTTGCTCGAATCCAAGGC
AGAATCTGAACGTTACCGCGCACAGCACGGTGGTTCGGCATCATCTGCTCCTCGTCAACAGAGTCAGTCTTCGTTCGGCG
GAAATCCGTACGGATCTCCTGCCAACAATCAAGGCAGTTATCAGCAAGATAGCGGCTATGGCAACGGGAATAACGATGCC
ATGCAGGATCCGTTTGCCGGCAACGGCTCCAAGACGGATGTTTCGGAAGACGACTTGCCATTCTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(2-102)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Latilactobacillus sakei subsp. sakei 23K

59.116

100

0.591
  ssbA Bacillus subtilis subsp. subtilis str. 168

53.591

100

0.536