Detailed information    

insolico Bioinformatically predicted

Overview

Name   eeP   Type   Regulator
Locus tag   QYH55_RS04790 Genome accession   NZ_CP129341
Coordinates   979031..980308 (+) Length   425 a.a.
NCBI ID   WP_046921574.1    Uniprot ID   -
Organism   Ligilactobacillus ruminis strain SRCM218231     
Function   processing of ComS (predicted from homology)   
Competence regulation

Genomic Context

Location: 974031..985308
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QYH55_RS04760 (QYH55_04760) - 974036..974845 (-) 810 WP_301558643.1 N-acetylmuramoyl-L-alanine amidase -
  QYH55_RS04765 (QYH55_04765) - 975091..975705 (+) 615 WP_046921570.1 histidine phosphatase family protein -
  QYH55_RS04770 (QYH55_04770) pyrH 975824..976543 (+) 720 WP_046921571.1 UMP kinase -
  QYH55_RS04775 (QYH55_04775) frr 976763..977323 (+) 561 WP_003694053.1 ribosome recycling factor -
  QYH55_RS04780 (QYH55_04780) - 977432..978220 (+) 789 WP_301558644.1 isoprenyl transferase -
  QYH55_RS04785 (QYH55_04785) - 978220..979011 (+) 792 WP_301558645.1 phosphatidate cytidylyltransferase -
  QYH55_RS04790 (QYH55_04790) eeP 979031..980308 (+) 1278 WP_046921574.1 RIP metalloprotease RseP Regulator
  QYH55_RS04795 (QYH55_04795) - 980359..982077 (+) 1719 WP_080926651.1 proline--tRNA ligase -
  QYH55_RS04800 (QYH55_04800) - 982152..982760 (+) 609 WP_080926652.1 GNAT family N-acetyltransferase -
  QYH55_RS04805 (QYH55_04805) pdxT 983069..983641 (-) 573 WP_046921577.1 pyridoxal 5'-phosphate synthase glutaminase subunit PdxT -
  QYH55_RS04810 (QYH55_04810) pdxS 983646..984524 (-) 879 WP_046921578.1 pyridoxal 5'-phosphate synthase lyase subunit PdxS -

Sequence

Protein


Download         Length: 425 a.a.        Molecular weight: 46454.24 Da        Isoelectric Point: 9.3788

>NTDB_id=852436 QYH55_RS04790 WP_046921574.1 979031..980308(+) (eeP) [Ligilactobacillus ruminis strain SRCM218231]
MITTIITFIIVFGALVFVHEFGHYFFAKRSGILVREFSIGMGPKIYAYHKNGTTYTLRILPLGGYVRMAGLEDEEDSLKK
GQPISLLLDDNGIVRKINASSKTTLLNAVPLEVSAWDLDQELWIKGYENGDETKEVTYQVDHDAMIIESDGTEVQIAPLD
VRFQSATLPNRMMTNFAGALNNFLLAIVAFALVAVMQGGVITNTTTLGQVQHDSVAQKAGLKKGDTVVSINGEKVADFSE
MAAKIDANPGKKLIFKVKRGKNQVLNISLKPKTVTEDGKKSGKIGVVAKQAVNRSPIAIAEYGFVQTWNVMKQIFAALGA
MLHGFSLNDLGGPVAMYSYTSKAAQYGVVSVISLLAFLSVNLGIVNLLPIPALDGGKLLLNVIEAVRGKPIDPNKEVVLT
LIGFAFMLILMFLVTWNDIQRYFFR

Nucleotide


Download         Length: 1278 bp        

>NTDB_id=852436 QYH55_RS04790 WP_046921574.1 979031..980308(+) (eeP) [Ligilactobacillus ruminis strain SRCM218231]
GTGATTACGACAATAATAACTTTTATCATCGTCTTTGGAGCATTGGTGTTCGTACATGAATTCGGGCACTATTTCTTCGC
CAAGCGTTCCGGAATTTTGGTGCGTGAATTTTCCATCGGCATGGGGCCAAAAATTTACGCGTACCACAAAAACGGAACAA
CTTATACGCTGAGGATCTTGCCTCTTGGCGGATACGTTCGCATGGCCGGACTTGAAGATGAGGAAGATTCTTTGAAAAAA
GGACAGCCGATTTCGCTGTTGTTGGACGATAACGGCATCGTCAGGAAAATCAATGCATCTTCCAAGACGACTTTGTTAAA
TGCAGTGCCGCTTGAGGTGTCTGCATGGGATCTTGATCAAGAATTATGGATCAAAGGTTACGAAAATGGTGACGAAACAA
AAGAGGTAACCTATCAGGTCGATCACGATGCGATGATTATCGAATCAGACGGAACCGAGGTTCAGATTGCACCGCTTGAC
GTTCGATTTCAATCGGCGACGCTTCCTAACAGGATGATGACGAACTTTGCCGGGGCATTGAACAATTTTTTGCTGGCAAT
CGTTGCGTTTGCGCTCGTAGCAGTAATGCAGGGCGGCGTCATTACCAATACGACGACGCTTGGTCAAGTGCAGCACGATT
CCGTTGCGCAAAAAGCCGGGTTGAAAAAGGGCGACACGGTTGTTTCGATCAACGGCGAAAAGGTTGCCGATTTTTCGGAA
ATGGCTGCAAAAATTGATGCCAACCCGGGCAAAAAACTTATTTTTAAGGTCAAACGCGGCAAAAATCAGGTTCTAAACAT
CAGCCTCAAACCCAAGACGGTGACTGAAGACGGCAAAAAATCAGGCAAAATCGGGGTGGTTGCAAAACAAGCAGTCAACC
GCTCTCCGATTGCGATTGCCGAGTACGGGTTTGTTCAAACGTGGAACGTCATGAAACAGATTTTTGCGGCTTTGGGAGCA
ATGCTTCACGGATTCAGCTTAAATGATCTCGGAGGCCCCGTCGCGATGTATTCATATACTTCAAAAGCGGCTCAGTATGG
CGTTGTCAGCGTTATTTCGCTGCTCGCGTTTCTATCGGTCAACCTTGGAATCGTCAACCTGCTGCCGATTCCTGCTTTGG
ATGGCGGCAAGCTTTTGCTGAACGTTATTGAAGCTGTCAGAGGCAAGCCAATCGATCCGAATAAGGAAGTCGTTTTGACT
TTGATCGGTTTCGCATTTATGCTGATTTTAATGTTTTTGGTAACGTGGAACGATATTCAGCGGTATTTCTTCCGCTAA

Domains

Predicted by InterproScan.

PDZ domain (PDZ_6)

(209-259)

Peptidase family M50 (Peptidase_M50)

(7-410)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  eeP Streptococcus thermophilus LMD-9

48.131

100

0.485
  eeP Streptococcus thermophilus LMG 18311

47.887

100

0.48