Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   QYH52_RS00040 Genome accession   NZ_CP129339
Coordinates   8219..8773 (+) Length   184 a.a.
NCBI ID   WP_010690103.1    Uniprot ID   -
Organism   Ligilactobacillus animalis strain SRCM217969     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 3219..13773
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QYH52_RS00025 (QYH52_00025) gyrA 4355..6817 (+) 2463 WP_035447011.1 DNA gyrase subunit A -
  QYH52_RS00030 (QYH52_00030) - 6916..7551 (-) 636 WP_066023739.1 NAD(P)-dependent oxidoreductase -
  QYH52_RS00035 (QYH52_00035) rpsF 7892..8182 (+) 291 WP_004049701.1 30S ribosomal protein S6 -
  QYH52_RS00040 (QYH52_00040) ssb 8219..8773 (+) 555 WP_010690103.1 single-stranded DNA-binding protein Machinery gene
  QYH52_RS00045 (QYH52_00045) rpsR 8795..9031 (+) 237 WP_003695889.1 30S ribosomal protein S18 -
  QYH52_RS00050 (QYH52_00050) - 9590..9916 (-) 327 WP_036687233.1 hypothetical protein -
  QYH52_RS00055 (QYH52_00055) - 10281..10487 (+) 207 WP_066023738.1 hypothetical protein -
  QYH52_RS00060 (QYH52_00060) - 10564..11547 (-) 984 WP_301402930.1 DUF1002 domain-containing protein -
  QYH52_RS00065 (QYH52_00065) pnuC 11826..12596 (+) 771 WP_035446998.1 nicotinamide riboside transporter PnuC -

Sequence

Protein


Download         Length: 184 a.a.        Molecular weight: 20145.85 Da        Isoelectric Point: 4.6382

>NTDB_id=852378 QYH52_RS00040 WP_010690103.1 8219..8773(+) (ssb) [Ligilactobacillus animalis strain SRCM217969]
MINSVVLVGRLTRDPELRYTPSGAAVASFTVAIDRRFTNQQGQREADFINCVMWRKAAENFANFTHKGSLVGIEGRIQTR
SYENQQGQRVYVTEVLAENFSLLESKAESERYRAQHGNSNANVQGSAPSNDMQSSNPFGTPANNQTNDAFGGNGFDTNTN
NSNNAADPFAGGQQIDISDDDLPF

Nucleotide


Download         Length: 555 bp        

>NTDB_id=852378 QYH52_RS00040 WP_010690103.1 8219..8773(+) (ssb) [Ligilactobacillus animalis strain SRCM217969]
TTGATCAATTCAGTTGTTCTAGTAGGTCGTTTGACCCGAGATCCTGAACTGCGCTACACGCCTTCAGGGGCAGCCGTGGC
AAGCTTTACTGTCGCGATCGACCGTCGTTTCACTAACCAACAAGGTCAACGTGAAGCTGATTTCATCAATTGCGTAATGT
GGCGTAAAGCAGCCGAAAACTTTGCTAACTTTACCCACAAAGGTTCCTTAGTTGGGATCGAAGGACGGATCCAAACCCGT
TCTTATGAAAATCAGCAAGGTCAACGTGTTTATGTTACTGAAGTTTTAGCTGAGAATTTCTCACTTTTGGAATCCAAGGC
TGAATCAGAAAGGTATCGTGCCCAACACGGCAACAGTAACGCTAATGTGCAAGGTTCAGCTCCTTCAAATGATATGCAGT
CATCTAATCCATTTGGGACTCCAGCAAATAATCAGACCAATGATGCTTTTGGTGGTAATGGTTTTGATACCAATACAAAC
AATAGTAACAATGCTGCTGATCCATTTGCCGGTGGTCAACAGATCGATATCTCAGATGATGACTTACCATTCTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(2-102)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Latilactobacillus sakei subsp. sakei 23K

61.081

100

0.614
  ssbA Bacillus subtilis subsp. subtilis str. 168

57.219

100

0.582