Detailed information    

insolico Bioinformatically predicted

Overview

Name   phrF   Type   Regulator
Locus tag   QYC34_RS21355 Genome accession   NZ_CP129338
Coordinates   3962932..3963051 (+) Length   39 a.a.
NCBI ID   WP_009968329.1    Uniprot ID   A0A199WEM2
Organism   Bacillus subtilis strain SRCM126725     
Function   antagonize RapF (predicted from homology)   
Competence regulation

Genomic Context

Location: 3957932..3968051
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QYC34_RS21335 (QYC34_21335) albG 3958096..3958797 (+) 702 WP_046160959.1 antilisterial bacteriocin subtilosin biosynthesis protein AlbG -
  QYC34_RS21340 (QYC34_21340) ywhL 3958803..3960179 (-) 1377 WP_041351296.1 YncE family protein -
  QYC34_RS21345 (QYC34_21345) ywhK 3960218..3961573 (-) 1356 WP_015250986.1 YncE family protein -
  QYC34_RS22100 - 3961570..3961800 (-) 231 Protein_4144 hypothetical protein -
  QYC34_RS21350 (QYC34_21350) rapF 3961803..3962948 (+) 1146 WP_021480843.1 response regulator aspartate phosphatase RapF Regulator
  QYC34_RS21355 (QYC34_21355) phrF 3962932..3963051 (+) 120 WP_009968329.1 phosphatase RapF inhibitor PhrF Regulator
  QYC34_RS21360 (QYC34_21360) ywhH 3963149..3963622 (+) 474 Protein_4147 YbaK/EbsC family protein -
  QYC34_RS21365 (QYC34_21365) speB 3963653..3964525 (-) 873 WP_003227545.1 agmatinase -
  QYC34_RS21370 (QYC34_21370) speE 3964586..3965416 (-) 831 WP_003227543.1 spermidine synthase -
  QYC34_RS21375 (QYC34_21375) pbpG 3965618..3967693 (+) 2076 WP_015384942.1 transglycosylase domain-containing protein -

Sequence

Protein


Download         Length: 39 a.a.        Molecular weight: 4199.10 Da        Isoelectric Point: 10.4997

>NTDB_id=852376 QYC34_RS21355 WP_009968329.1 3962932..3963051(+) (phrF) [Bacillus subtilis strain SRCM126725]
MKLKSKLLLSCLALSTVFVATTIANAPTHQIEVAQRGMI

Nucleotide


Download         Length: 120 bp        

>NTDB_id=852376 QYC34_RS21355 WP_009968329.1 3962932..3963051(+) (phrF) [Bacillus subtilis strain SRCM126725]
ATGAAATTGAAGTCTAAACTATTACTCTCTTGTCTGGCTCTAAGCACTGTGTTCGTGGCAACAACTATTGCAAATGCACC
TACACACCAAATTGAAGTTGCACAACGAGGAATGATTTAA

Domains

Predicted by InterproScan.

Rap-phr extracellular signalling (PhrC_PhrF)

(3-39)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A199WEM2

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  phrF Bacillus subtilis subsp. subtilis str. 168

100

100

1
  phrC Bacillus subtilis subsp. subtilis str. 168

48.718

100

0.487