Detailed information    

insolico Bioinformatically predicted

Overview


Name   comP   Type   Regulator
Locus tag   QYC34_RS18325 Genome accession   NZ_CP129338
Coordinates   3366151..3368448 (-) Length   765 a.a.
NCBI ID   WP_087614687.1    Uniprot ID   -
Organism   Bacillus subtilis strain SRCM126725     
Function   phosphorylation of ComA (predicted from homology)   
Competence regulation

Genomic Context


Location: 3361151..3373448
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QYC34_RS18285 (QYC34_18285) mrpB 3361616..3362047 (+) 432 WP_038429537.1 Na(+)/H(+) antiporter subunit B -
  QYC34_RS18290 (QYC34_18290) mrpC 3362047..3362388 (+) 342 WP_003220730.1 Na(+)/H(+) antiporter subunit C -
  QYC34_RS18295 (QYC34_18295) mrpD 3362381..3363862 (+) 1482 WP_046160793.1 Na+/H+ antiporter subunit D -
  QYC34_RS18300 (QYC34_18300) mrpE 3363868..3364344 (+) 477 WP_003228815.1 Na+/H+ antiporter subunit E -
  QYC34_RS18305 (QYC34_18305) mrpF 3364344..3364628 (+) 285 WP_003228814.1 Na(+)/H(+) antiporter subunit F1 -
  QYC34_RS18310 (QYC34_18310) mnhG 3364612..3364986 (+) 375 WP_015714623.1 monovalent cation/H(+) antiporter subunit G -
  QYC34_RS18315 (QYC34_18315) yuxO 3365027..3365407 (-) 381 WP_017695528.1 hotdog fold thioesterase -
  QYC34_RS18320 (QYC34_18320) comA 3365426..3366070 (-) 645 WP_003220716.1 two-component system response regulator ComA Regulator
  QYC34_RS18325 (QYC34_18325) comP 3366151..3368448 (-) 2298 WP_087614687.1 histidine kinase Regulator
  QYC34_RS18330 (QYC34_18330) comX 3368456..3368617 (-) 162 WP_003241045.1 competence pheromone ComX -
  QYC34_RS18335 (QYC34_18335) - 3368632..3369492 (-) 861 WP_046160795.1 polyprenyl synthetase family protein -
  QYC34_RS18340 (QYC34_18340) degQ 3369677..3369817 (-) 141 WP_003220708.1 degradation enzyme regulation protein DegQ Regulator
  QYC34_RS18345 (QYC34_18345) - 3370039..3370164 (+) 126 WP_120028613.1 hypothetical protein -
  QYC34_RS18350 (QYC34_18350) - 3370279..3370647 (+) 369 WP_046160796.1 hypothetical protein -
  QYC34_RS18355 (QYC34_18355) pdeH 3370623..3371852 (-) 1230 WP_003243525.1 cyclic di-GMP phosphodiesterase -

Sequence


Protein


Download         Length: 765 a.a.        Molecular weight: 88376.80 Da        Isoelectric Point: 8.0515

>NTDB_id=852364 QYC34_RS18325 WP_087614687.1 3366151..3368448(-) (comP) [Bacillus subtilis strain SRCM126725]
MKSRTNKISVLLVVISLLYVIYLTYISNNNLLVGATVSKGKNGDVVITNVDEYSMASYSGIEKGDIVKRINNQKINTKEI
KMNKLKNVSSMVVERNGKDVELKLTLFNDKNFSTYLIPLMFYIVCLFCCLFIIKINESKDLPSALVLIIFLLSASIAYIS
AGVSVKGDILCRCIMVVTLISVPLNYLLFLYHYFRELGTTLFDKKVFILYLVPIINVVCEMFRSHLFFRDYVPKLSLLSF
FFLFIIVGIYFCIILIKNKDTEQAHIIKVLTIINIFSFSPFLCLYLIPYVFLNAHYVSSFLAASFMMLIPFSLVFQFMTN
KIYNVDFILSRLRYYGFLALTPTIILISTIELISSPDSDFYSVKLTFLIYIIMLAVFYYKEVLDFRFRLKRVSEKFNYQD
SIYKFTQMIRDSTSLSQVFEELKNTILEVSLVSRAHVYEVSADGNIKLYDAENVNSFEKVYEKEFRKVTSEIGKIVEFNK
GFVMKIGERGGKSFVILCLSKMNTPRLTLEELSWLKTLAFYTNVSIENVMKIEELMSHLEEIKQQESNPVWLKKLMYTIE
EKQRSDLARDLHDSVLQDLISLKRQCELFLGDFKKGDNPCREEVQDKLVQMNEQMSDVISMTRETCHELRPQLLYDLGLV
KALSKLVAQQQERVPFHIRLNTGRFTASLDLDSQLNLYRIIQEFLSNAVKHSQATDVLIMLISIQNKIVLHYEDDGVGFD
QEKNTEHSMSMGLSGIKERVRALDGRLRIETSEGKGFKADIEIEL

Nucleotide


Download         Length: 2298 bp        

>NTDB_id=852364 QYC34_RS18325 WP_087614687.1 3366151..3368448(-) (comP) [Bacillus subtilis strain SRCM126725]
ATGAAGTCTAGAACCAATAAAATTTCTGTATTGTTAGTTGTAATAAGTCTGTTATATGTTATTTATTTGACCTATATAAG
CAATAATAATTTGTTAGTTGGAGCAACTGTTTCGAAAGGGAAGAACGGAGACGTTGTAATTACCAATGTAGATGAATATT
CAATGGCATCATACAGTGGAATAGAAAAAGGGGATATCGTAAAGCGTATTAATAATCAAAAGATAAACACTAAAGAAATA
AAAATGAATAAGCTTAAAAATGTGAGCTCAATGGTTGTTGAGAGAAATGGCAAGGATGTTGAGCTAAAGCTGACTTTATT
TAATGATAAAAATTTTTCTACTTACTTAATACCGTTAATGTTTTATATTGTTTGTTTATTTTGTTGCCTATTTATAATAA
AAATAAATGAATCAAAGGATTTACCATCTGCTTTAGTTTTAATTATATTTCTGTTATCCGCTTCTATTGCTTATATAAGT
GCAGGAGTTTCTGTTAAAGGCGATATACTATGCAGATGTATTATGGTGGTAACATTAATATCTGTACCGCTAAACTACCT
TCTCTTTCTTTATCATTATTTTAGAGAGTTAGGCACTACCTTATTTGATAAAAAAGTTTTCATTTTATATTTGGTACCGA
TCATAAATGTAGTGTGTGAAATGTTCCGTTCACACCTTTTCTTTCGTGATTATGTGCCTAAATTAAGTTTACTATCCTTT
TTCTTTTTATTTATCATAGTAGGGATATATTTCTGTATCATTTTAATTAAAAATAAAGATACTGAACAAGCGCATATTAT
TAAGGTTCTCACTATTATTAATATCTTTTCTTTCTCACCTTTTTTGTGTTTATATTTGATACCGTATGTCTTTTTAAATG
CGCACTATGTTTCATCCTTTTTAGCAGCTTCATTTATGATGCTAATACCTTTCTCCTTAGTATTTCAATTCATGACAAAT
AAAATCTATAATGTAGATTTTATTTTAAGCAGATTAAGGTACTATGGCTTTTTAGCTCTAACGCCAACAATTATTCTAAT
CTCTACAATTGAATTGATTAGTAGTCCTGATAGTGATTTTTATAGTGTTAAACTAACCTTTTTAATTTATATTATCATGT
TGGCGGTCTTTTATTATAAAGAAGTACTTGATTTCAGATTTAGATTAAAAAGGGTCTCGGAAAAATTCAATTATCAAGAC
AGTATATATAAATTCACGCAGATGATAAGAGACTCTACTTCCCTGTCTCAAGTATTTGAAGAACTGAAAAATACTATACT
TGAGGTTTCTCTTGTTAGCCGAGCACATGTATATGAAGTTTCAGCTGACGGAAATATTAAACTATATGATGCTGAGAACG
TAAATTCATTTGAAAAAGTCTATGAAAAAGAATTTAGAAAAGTAACATCCGAGATAGGGAAAATCGTTGAATTTAATAAA
GGTTTTGTCATGAAGATAGGTGAACGCGGTGGTAAATCATTTGTGATCCTTTGTTTATCTAAAATGAATACGCCTCGTCT
CACACTCGAAGAACTTTCTTGGCTGAAAACTTTGGCTTTTTATACAAACGTATCGATCGAAAACGTCATGAAAATCGAAG
AACTAATGAGTCATTTAGAAGAAATAAAACAACAAGAATCCAACCCCGTATGGCTCAAAAAACTCATGTATACGATCGAG
GAAAAACAACGCTCGGATCTCGCCCGCGATCTCCACGATTCGGTTCTTCAGGATTTGATTTCCTTAAAACGCCAGTGTGA
GCTGTTTTTGGGTGATTTTAAGAAGGGTGATAATCCGTGCCGTGAAGAGGTGCAGGACAAGCTTGTACAGATGAATGAGC
AGATGTCTGATGTGATTTCGATGACGAGGGAGACGTGTCATGAGCTGCGGCCGCAGCTTCTGTATGATCTTGGGCTGGTC
AAGGCGCTGTCGAAGCTGGTGGCGCAGCAGCAGGAGCGGGTTCCGTTTCATATCCGTTTAAATACCGGGAGATTTACGGC
TTCCCTTGATCTGGATTCGCAGCTGAATTTGTACCGGATCATTCAAGAGTTTCTGTCTAATGCGGTCAAGCACTCTCAGG
CGACGGATGTGCTGATTATGCTCATCAGTATTCAAAACAAAATCGTTCTTCATTATGAGGATGATGGCGTAGGGTTTGAT
CAGGAAAAGAATACTGAGCATTCCATGAGCATGGGGCTTTCTGGCATTAAGGAGAGAGTCAGGGCTTTAGATGGGCGCCT
TCGGATTGAAACAAGTGAAGGAAAGGGCTTTAAGGCTGATATTGAAATCGAATTGTAA


Secondary structure


Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure


Source ID Structure

Transmembrane helices


Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.



Visualization of predicted probability:


Similar proteins


Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comP Bacillus subtilis subsp. subtilis str. 168

59.067

100

0.596