Detailed information    

insolico Bioinformatically predicted

Overview

Name   comA   Type   Regulator
Locus tag   QYC34_RS18320 Genome accession   NZ_CP129338
Coordinates   3365426..3366070 (-) Length   214 a.a.
NCBI ID   WP_003220716.1    Uniprot ID   -
Organism   Bacillus subtilis strain SRCM126725     
Function   promoting transcription of comS (predicted from homology)   
Competence regulation

Genomic Context

Location: 3360426..3371070
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QYC34_RS18285 (QYC34_18285) mrpB 3361616..3362047 (+) 432 WP_038429537.1 Na(+)/H(+) antiporter subunit B -
  QYC34_RS18290 (QYC34_18290) mrpC 3362047..3362388 (+) 342 WP_003220730.1 Na(+)/H(+) antiporter subunit C -
  QYC34_RS18295 (QYC34_18295) mrpD 3362381..3363862 (+) 1482 WP_046160793.1 Na+/H+ antiporter subunit D -
  QYC34_RS18300 (QYC34_18300) mrpE 3363868..3364344 (+) 477 WP_003228815.1 Na+/H+ antiporter subunit E -
  QYC34_RS18305 (QYC34_18305) mrpF 3364344..3364628 (+) 285 WP_003228814.1 Na(+)/H(+) antiporter subunit F1 -
  QYC34_RS18310 (QYC34_18310) mnhG 3364612..3364986 (+) 375 WP_015714623.1 monovalent cation/H(+) antiporter subunit G -
  QYC34_RS18315 (QYC34_18315) yuxO 3365027..3365407 (-) 381 WP_017695528.1 hotdog fold thioesterase -
  QYC34_RS18320 (QYC34_18320) comA 3365426..3366070 (-) 645 WP_003220716.1 two-component system response regulator ComA Regulator
  QYC34_RS18325 (QYC34_18325) comP 3366151..3368448 (-) 2298 WP_087614687.1 histidine kinase Regulator
  QYC34_RS18330 (QYC34_18330) comX 3368456..3368617 (-) 162 WP_003241045.1 competence pheromone ComX -
  QYC34_RS18335 (QYC34_18335) - 3368632..3369492 (-) 861 WP_046160795.1 polyprenyl synthetase family protein -
  QYC34_RS18340 (QYC34_18340) degQ 3369677..3369817 (-) 141 WP_003220708.1 degradation enzyme regulation protein DegQ Regulator
  QYC34_RS18345 (QYC34_18345) - 3370039..3370164 (+) 126 WP_120028613.1 hypothetical protein -
  QYC34_RS18350 (QYC34_18350) - 3370279..3370647 (+) 369 WP_046160796.1 hypothetical protein -

Sequence

Protein


Download         Length: 214 a.a.        Molecular weight: 24128.51 Da        Isoelectric Point: 4.6857

>NTDB_id=852363 QYC34_RS18320 WP_003220716.1 3365426..3366070(-) (comA) [Bacillus subtilis strain SRCM126725]
MKKILVIDDHPAVMEGTKTILETDSNLSVDCLSPEPSEQFIKQHDFSSYDLILMDLNLGGEVNGMELSKQILQENPHCKI
IVYTGYEVEDYFEEAIRAGLHGAISKTESKEKITQYIYHVLNGEILVDFAYFKQLMTQQKTKPAPSSQKEQDVLTPRECL
ILQEVEKGFTNQEIADALHLSKRSIEYSLTSIFNKLNVGSRTEAVLIAKSDGVL

Nucleotide


Download         Length: 645 bp        

>NTDB_id=852363 QYC34_RS18320 WP_003220716.1 3365426..3366070(-) (comA) [Bacillus subtilis strain SRCM126725]
ATGAAAAAGATACTAGTGATTGATGACCATCCGGCTGTCATGGAAGGCACCAAGACAATTTTGGAAACGGATTCGAATTT
GTCTGTTGATTGTCTCAGTCCTGAACCGAGCGAACAGTTTATCAAGCAGCATGATTTCTCGTCATATGATCTCATTTTAA
TGGATCTGAATTTAGGCGGCGAGGTCAATGGGATGGAGCTTTCTAAACAGATTTTACAAGAGAATCCTCATTGTAAAATT
ATCGTGTATACCGGTTATGAGGTCGAGGATTATTTCGAGGAAGCGATTCGTGCGGGTCTGCACGGTGCCATCAGCAAAAC
GGAATCTAAAGAAAAGATCACCCAATACATATACCACGTACTCAACGGAGAAATTTTAGTCGATTTTGCTTACTTTAAAC
AGCTGATGACTCAGCAAAAAACAAAGCCGGCTCCTTCCTCTCAAAAAGAACAAGATGTGCTCACACCTAGAGAATGCCTG
ATTCTTCAAGAAGTTGAAAAAGGATTTACAAACCAAGAAATCGCAGATGCCCTTCATTTAAGCAAGCGGTCCATTGAATA
CAGCTTGACATCGATTTTTAATAAGCTGAATGTCGGTTCACGGACGGAAGCGGTTTTGATTGCGAAATCAGACGGTGTAC
TTTAA

Domains

Predicted by InterproScan.

Bacterial regulatory proteins, luxR family (GerE)

(152-208)

Response regulator receiver domain (Response_reg)

(4-117)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comA Bacillus subtilis subsp. subtilis str. 168

100

100

1