Detailed information    

insolico Bioinformatically predicted

Overview

Name   kre   Type   Regulator
Locus tag   QYC34_RS09175 Genome accession   NZ_CP129338
Coordinates   1726088..1726552 (-) Length   154 a.a.
NCBI ID   WP_003232406.1    Uniprot ID   G4NVM0
Organism   Bacillus subtilis strain SRCM126725     
Function   regulation of regulators (predicted from homology)   
Competence regulation

Genomic Context

Location: 1721088..1731552
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QYC34_RS09155 (QYC34_09155) kinA 1721556..1723388 (+) 1833 WP_069964148.1 sporulation histidine kinase KinA -
  QYC34_RS09160 (QYC34_09160) dapX 1723385..1724566 (-) 1182 WP_082090376.1 aminotransferase A -
  QYC34_RS09165 (QYC34_09165) - 1724768..1724929 (-) 162 WP_003245246.1 hypothetical protein -
  QYC34_RS09170 (QYC34_09170) cheV 1725133..1726044 (+) 912 WP_014476655.1 chemotaxis protein CheV -
  QYC34_RS09175 (QYC34_09175) kre 1726088..1726552 (-) 465 WP_003232406.1 YkyB family protein Regulator
  QYC34_RS09180 (QYC34_09180) ykuC 1726678..1727970 (-) 1293 WP_015252195.1 MFS transporter -
  QYC34_RS09185 (QYC34_09185) ltdD 1728046..1728540 (-) 495 WP_072174092.1 L,D-transpeptidase family protein -
  QYC34_RS09190 (QYC34_09190) ppeE 1728597..1729457 (-) 861 WP_003232400.1 metallophosphoesterase -
  QYC34_RS09195 (QYC34_09195) fadH 1729600..1730364 (+) 765 WP_015383534.1 2,4-dienoyl-CoA reductase -

Sequence

Protein


Download         Length: 154 a.a.        Molecular weight: 17895.71 Da        Isoelectric Point: 10.3545

>NTDB_id=852331 QYC34_RS09175 WP_003232406.1 1726088..1726552(-) (kre) [Bacillus subtilis strain SRCM126725]
MDDHAYTKDLQPTVENLSKAVYTVNRHAKTAPNPKYLYLLKKRALQKLVKEGKGKKIGLHFSKNPRFSQQQSDVLISIGD
YYFHMPPTKEDFEHLPHLGTLNQSYRNPKAQMSLTKAKHLLQEYVGMKEKPLVPNRQQPAYHKPVFKKLGESYF

Nucleotide


Download         Length: 465 bp        

>NTDB_id=852331 QYC34_RS09175 WP_003232406.1 1726088..1726552(-) (kre) [Bacillus subtilis strain SRCM126725]
ATGGACGACCATGCATATACGAAAGATCTGCAGCCAACCGTAGAAAATCTTTCAAAAGCAGTTTACACTGTGAACCGCCA
TGCAAAAACCGCCCCCAACCCTAAATACCTATATCTGCTGAAAAAACGGGCTTTGCAAAAGCTTGTCAAAGAAGGTAAAG
GAAAGAAAATAGGGCTTCATTTTTCAAAAAATCCAAGGTTCAGCCAACAGCAATCGGACGTGCTTATCTCAATCGGAGAC
TACTATTTTCACATGCCTCCAACTAAAGAAGACTTCGAACATCTTCCGCATTTAGGTACACTTAATCAATCGTACCGAAA
TCCTAAAGCTCAAATGTCTTTAACAAAAGCGAAACACCTATTGCAAGAATATGTCGGCATGAAAGAAAAGCCGCTAGTGC
CAAATCGCCAGCAGCCAGCTTACCATAAACCGGTCTTTAAAAAACTTGGCGAGAGTTACTTTTAA

Domains

Predicted by InterproScan.

YkyB-like protein (YkyB)

(14-128)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB G4NVM0

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  kre Bacillus subtilis subsp. subtilis str. 168

100

100

1