Detailed information    

insolico Bioinformatically predicted

Overview

Name   spo0J   Type   Regulator
Locus tag   QYR57_RS09945 Genome accession   NZ_CP129327
Coordinates   2050782..2051555 (+) Length   257 a.a.
NCBI ID   WP_367561680.1    Uniprot ID   -
Organism   Streptococcus iniae strain Si 4-21     
Function   require for competence development (predicted from homology)   
Competence regulation

Genomic Context

Location: 2045782..2056555
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QYR57_RS09920 (QYR57_09930) - 2047094..2047210 (-) 117 Protein_1932 IS30 family transposase -
  QYR57_RS09930 (QYR57_09940) rlmH 2047554..2048033 (-) 480 WP_003100536.1 23S rRNA (pseudouridine(1915)-N(3))-methyltransferase RlmH -
  QYR57_RS09935 (QYR57_09945) - 2048174..2049349 (+) 1176 WP_367561679.1 IS256 family transposase -
  QYR57_RS09940 (QYR57_09950) htrA 2049501..2050703 (+) 1203 WP_016356270.1 S1C family serine protease Regulator
  QYR57_RS09945 (QYR57_09955) spo0J 2050782..2051555 (+) 774 WP_367561680.1 ParB/RepB/Spo0J family partition protein Regulator
  QYR57_RS09950 (QYR57_09960) dnaA 2051790..2053145 (+) 1356 WP_367561681.1 chromosomal replication initiator protein DnaA -
  QYR57_RS09955 (QYR57_09965) dnaN 2053301..2054437 (+) 1137 WP_003100540.1 DNA polymerase III subunit beta -
  QYR57_RS09960 (QYR57_09970) - 2054499..2054696 (+) 198 WP_003100542.1 DUF951 domain-containing protein -
  QYR57_RS09965 (QYR57_09975) ychF 2054925..2056043 (+) 1119 WP_367561682.1 redox-regulated ATPase YchF -

Sequence

Protein


Download         Length: 257 a.a.        Molecular weight: 29109.47 Da        Isoelectric Point: 9.8369

>NTDB_id=852239 QYR57_RS09945 WP_367561680.1 2050782..2051555(+) (spo0J) [Streptococcus iniae strain Si 4-21]
MTETYKKIAIKDIVANPYQPRLHFNEDELKELATSISLNGLIQPIIVRKSEVFGYELIAGERRLRASQIAGLTEIPAIIK
TISNSESMNQAIIENLQRSNLNPIEEAKAFQSIIDKNQLTHDQLATYMGKSRPYITNTIRLLQLSTSVLDAIEKKTISSG
HARDLLALSTKEEQDKYLNYIISQNLNVRQTESLIRKSKVKKEKKKEKTLFTKAIENELAKSLGLAVSISLNKDGSGQCH
FTFHNDDELNRIINKLK

Nucleotide


Download         Length: 774 bp        

>NTDB_id=852239 QYR57_RS09945 WP_367561680.1 2050782..2051555(+) (spo0J) [Streptococcus iniae strain Si 4-21]
ATGACAGAAACATATAAAAAAATAGCCATTAAAGATATTGTTGCTAATCCTTATCAACCAAGATTACATTTTAATGAAGA
TGAGTTAAAAGAATTAGCGACATCAATTTCTTTAAATGGTTTAATTCAGCCAATTATCGTCCGTAAATCTGAAGTCTTTG
GTTATGAATTAATTGCTGGTGAAAGAAGATTAAGAGCTTCTCAAATAGCAGGTTTAACTGAAATACCTGCTATTATCAAA
ACTATTTCTAATAGTGAGAGTATGAATCAAGCTATTATTGAAAATTTACAACGTTCCAATTTAAATCCAATAGAAGAAGC
TAAAGCTTTTCAAAGTATTATTGATAAAAATCAATTAACCCATGATCAATTAGCGACATATATGGGGAAATCTAGACCTT
ATATTACAAATACAATTAGACTCTTACAATTATCCACATCTGTTCTAGATGCCATTGAAAAAAAGACAATAAGTTCTGGC
CACGCACGTGACCTTCTAGCACTCTCAACTAAGGAAGAACAAGATAAATATCTTAATTATATTATCAGTCAAAACTTAAA
TGTTCGACAAACAGAATCTCTTATTCGAAAGAGTAAGGTTAAAAAAGAAAAGAAAAAAGAAAAGACACTTTTTACAAAAG
CTATTGAAAATGAGCTTGCTAAATCACTTGGACTAGCAGTTTCAATTTCCTTAAACAAAGATGGTAGTGGGCAGTGTCAT
TTTACTTTTCACAACGACGACGAATTAAACAGAATTATCAATAAGCTAAAATAA

Domains

Predicted by InterproScan.

ParB/Sulfiredoxin domain (ParB_N)

(7-95)

HTH domain found in ParB protein (HTH_ParB)

(147-197)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  spo0J Streptococcus mutans UA159

56.25

99.611

0.56