Detailed information    

insolico Bioinformatically predicted

Overview

Name   comL   Type   Machinery gene
Locus tag   V6S32_RS17185 Genome accession   NZ_CP145683
Coordinates   3492702..3493439 (+) Length   245 a.a.
NCBI ID   WP_000197686.1    Uniprot ID   P0AC03
Organism   Escherichia coli strain S1-KEN-07-A     
Function   DNA binding (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3487702..3498439
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  V6S32_RS17170 (V6S32_17175) clpC 3488156..3490729 (-) 2574 WP_001539382.1 ATP-dependent chaperone ClpB Regulator
  V6S32_RS17175 (V6S32_17180) yfiH 3490859..3491590 (-) 732 WP_000040138.1 purine nucleoside phosphorylase YfiH -
  V6S32_RS17180 (V6S32_17185) rluD 3491587..3492567 (-) 981 WP_000079112.1 23S rRNA pseudouridine(1911/1915/1917) synthase RluD -
  V6S32_RS17185 (V6S32_17190) comL 3492702..3493439 (+) 738 WP_000197686.1 outer membrane protein assembly factor BamD Machinery gene
  V6S32_RS17190 (V6S32_17195) raiA 3493709..3494050 (+) 342 WP_000178456.1 ribosome-associated translation inhibitor RaiA -
  V6S32_RS17195 (V6S32_17200) pheL 3494154..3494201 (+) 48 WP_001386991.1 pheA operon leader peptide PheL -
  V6S32_RS17200 (V6S32_17205) pheA 3494300..3495460 (+) 1161 WP_000200106.1 bifunctional chorismate mutase/prephenate dehydratase -
  V6S32_RS17205 (V6S32_17210) tyrA 3495503..3496624 (-) 1122 WP_001539387.1 bifunctional chorismate mutase/prephenate dehydrogenase -
  V6S32_RS17210 (V6S32_17215) aroF 3496635..3497705 (-) 1071 WP_001168045.1 3-deoxy-7-phosphoheptulonate synthase AroF -
  V6S32_RS17215 (V6S32_17220) yfiL 3497915..3498280 (+) 366 WP_001298694.1 DUF2799 domain-containing protein -

Sequence

Protein


Download         Length: 245 a.a.        Molecular weight: 27829.40 Da        Isoelectric Point: 6.4874

>NTDB_id=852199 V6S32_RS17185 WP_000197686.1 3492702..3493439(+) (comL) [Escherichia coli strain S1-KEN-07-A]
MTRMKYLVAAATLSLFLAGCSGSKEEVPDNPPNEIYATAQQKLQDGNWRQAITQLEALDNRYPFGPYSQQVQLDLIYAYY
KNADLPLAQAAIDRFIRLNPTHPNIDYVMYMRGLTNMALDDSALQGFFGVDRSDRDPQHARAAFSDFSKLVRGYPNSQYT
TDATKRLVFLKDRLAKYEYSVAEYYTERGAWVAVVNRVEGMLRDYPDTQATRDALPLMENAYRQMQMNAQAEKVAKIIAA
NSSNT

Nucleotide


Download         Length: 738 bp        

>NTDB_id=852199 V6S32_RS17185 WP_000197686.1 3492702..3493439(+) (comL) [Escherichia coli strain S1-KEN-07-A]
ATGACGCGCATGAAATATCTGGTGGCAGCCGCCACACTAAGCCTGTTTTTGGCGGGTTGCTCGGGGTCAAAGGAAGAAGT
ACCTGATAATCCGCCAAATGAAATTTACGCGACTGCACAACAAAAGCTGCAGGACGGTAACTGGAGACAGGCAATAACGC
AACTGGAAGCGTTAGATAATCGCTATCCGTTTGGTCCGTATTCGCAGCAGGTGCAGCTGGATCTCATCTACGCCTACTAT
AAAAACGCCGATTTGCCGTTAGCACAGGCTGCCATCGATCGTTTTATTCGCCTTAACCCGACCCATCCGAATATCGATTA
TGTCATGTACATGCGTGGCCTGACCAATATGGCGCTGGATGACAGTGCGCTGCAAGGGTTCTTTGGCGTTGACCGTAGCG
ATCGCGATCCTCAACATGCACGAGCTGCGTTTAGTGACTTTTCCAAACTGGTGCGCGGCTATCCGAACAGTCAGTACACC
ACCGATGCCACCAAACGTCTGGTATTCCTGAAAGATCGTCTGGCGAAATATGAATACTCCGTGGCCGAGTATTATACAGA
ACGTGGTGCATGGGTTGCTGTCGTTAACCGCGTAGAAGGCATGTTGCGCGACTATCCGGATACCCAGGCTACGCGTGATG
CGCTGCCGCTGATGGAAAATGCATACCGTCAGATGCAGATGAATGCGCAAGCTGAAAAAGTAGCGAAAATCATCGCCGCA
AACAGCAGCAATACATAA

Domains

Predicted by InterProScan.

Outer membrane lipoprotein (YfiO)

(28-236)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB P0AC03

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comL Neisseria meningitidis MC58

38.525

99.592

0.384
  comL Neisseria gonorrhoeae MS11

37.705

99.592

0.376