Detailed information    

insolico Bioinformatically predicted

Overview

Name   comEA   Type   Machinery gene
Locus tag   V6S33_RS05655 Genome accession   NZ_CP145679
Coordinates   1169420..1169749 (+) Length   109 a.a.
NCBI ID   WP_000680300.1    Uniprot ID   -
Organism   Escherichia coli strain S1-NGR-02-A     
Function   dsDNA binding (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1164420..1174749
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  V6S33_RS05645 (V6S33_05645) hupB 1166934..1167206 (+) 273 WP_001043542.1 nucleoid-associated protein HU-beta -
  V6S33_RS05650 (V6S33_05650) ppiD 1167398..1169269 (+) 1872 WP_001485582.1 peptidylprolyl isomerase -
  V6S33_RS05655 (V6S33_05655) comEA 1169420..1169749 (+) 330 WP_000680300.1 helix-hairpin-helix domain-containing protein Machinery gene
  V6S33_RS05660 (V6S33_05660) fadM 1169855..1170253 (+) 399 WP_001194547.1 long-chain acyl-CoA thioesterase FadM -
  V6S33_RS05665 (V6S33_05665) queC 1170305..1171000 (-) 696 WP_000817238.1 7-cyano-7-deazaguanine synthase QueC -
  V6S33_RS05670 (V6S33_05670) ybaE 1171065..1172765 (-) 1701 WP_001238197.1 SgrR family transcriptional regulator -
  V6S33_RS05675 (V6S33_05675) cof 1172865..1173683 (+) 819 WP_000113027.1 HMP-PP phosphatase -
  V6S33_RS05680 (V6S33_05680) decR 1173836..1174294 (+) 459 WP_000884589.1 DNA-binding transcriptional regulator DecR -

Sequence

Protein


Download         Length: 109 a.a.        Molecular weight: 11310.05 Da        Isoelectric Point: 9.0036

>NTDB_id=852080 V6S33_RS05655 WP_000680300.1 1169420..1169749(+) (comEA) [Escherichia coli strain S1-NGR-02-A]
MKHGIKALLITLSLACAGMSHSALAAAPAAQSKAAVSAKASDEEGTRVSINNASAEELARAMNGVGLKKAQAIVSYREEY
GPFKTVEDLKQVPGMGNSLVERNLAVLTL

Nucleotide


Download         Length: 330 bp        

>NTDB_id=852080 V6S33_RS05655 WP_000680300.1 1169420..1169749(+) (comEA) [Escherichia coli strain S1-NGR-02-A]
ATGAAACACGGAATTAAAGCACTGCTCATTACCCTGTCCCTGGCCTGTGCCGGAATGTCTCATAGCGCGCTGGCGGCAGC
TCCTGCAGCACAAAGTAAAGCAGCAGTATCGGCGAAAGCCAGTGACGAAGAAGGCACCCGGGTCAGCATTAATAATGCCA
GCGCGGAAGAGCTAGCCCGCGCGATGAATGGCGTTGGCCTGAAGAAAGCGCAGGCGATTGTCAGTTATCGCGAAGAGTAC
GGTCCGTTTAAAACGGTGGAGGATCTAAAGCAGGTGCCGGGGATGGGCAATTCGCTGGTGGAGCGTAATCTGGCGGTATT
AACTCTGTAA

Domains

Predicted by InterProScan.

Helix-hairpin-helix motif (HHH_3)

(45-104)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comEA Vibrio cholerae C6706

44.144

100

0.45
  comEA Vibrio cholerae strain A1552

44.144

100

0.45