Detailed information NTG0085203

Bioinformatically predicted

Overview

• Name: pilM
• Type: Machinery gene
• Locus tag: Pta6605_RS02180
• Genome accession: NZ_AP024464
• Coordinates: 481272..482336 (+)
• Length: 354 a.a.
• NCBI ID: WP_002551652.1
• Uniprot ID: A0A7Z6Y2Y4
• Organism: Pseudomonas amygdali pv. tabaci strain 6605
• Function: assembly of type IV pilus (predicted from homology) DNA binding and uptake

Genomic Context

Location: 476272..487336

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
Pta6605_RS02170 (Pta6605_04420)	-	476278..477546 (+)	1269	WP_002551650.1	malic enzyme-like NAD(P)-binding protein	-
Pta6605_RS02175 (Pta6605_04440)	-	478621..481062 (-)	2442	WP_371911680.1	penicillin-binding protein 1A	-
Pta6605_RS02180 (Pta6605_04450)	pilM	481272..482336 (+)	1065	WP_002551652.1	pilus assembly protein PilM	Machinery gene
Pta6605_RS02185 (Pta6605_04460)	-	482336..482935 (+)	600	WP_004654254.1	PilN domain-containing protein	-
Pta6605_RS02190 (Pta6605_04470)	pilO	482932..483555 (+)	624	WP_002551654.1	type 4a pilus biogenesis protein PilO	-
Pta6605_RS02195 (Pta6605_04480)	pilP	483552..484079 (+)	528	WP_002551655.1	type 4a pilus biogenesis lipoprotein PilP	-
Pta6605_RS02200 (Pta6605_04490)	pilQ	484127..486232 (+)	2106	WP_005743117.1	type IV pilus secretin PilQ	Machinery gene
Pta6605_RS02205 (Pta6605_04500)	aroK	486237..486755 (+)	519	WP_002551657.1	shikimate kinase AroK	-

Sequence

Protein

• Length: 354 a.a.
• Molecular weight: 38078.57 Da
• Isoelectric Point: 4.7008

>NTDB_id=85203 Pta6605_RS02180 WP_002551652.1 481272..482336(+) (pilM) [Pseudomonas amygdali pv. tabaci strain 6605]
MFELFSKKANTLLGIDISSTSVKLLELSRSGTRYKVESYAVEPLPANAVVEKNIAELEGVGQALSRVLAKAKTSVKIVAV
AVAGSAVITKTIEMDAGLSDDDMENQLKLEADQYIPYPLEEVAIDFEVQGYSVRNPERVEVLLAACRKENVEVREAALAL
AGLTARVVDVEAYALERSFGLLAAQLGNGHDELTVAVVDIGATMTTLSVLHHGRIIYTREQLFGGRQLTDEIQRRYGLSM
EEAGLAKKQGGLPDDYVSEVLDPFKDALVQQVSRSLQFFFAAGQYNSVDHIMLAGGTASISGLEHLIQRRIGTPTMVANP
FADMALSSKVNAGALASDAPALMIACGLALRSFD

Nucleotide

• Length: 1065 bp

>NTDB_id=85203 Pta6605_RS02180 WP_002551652.1 481272..482336(+) (pilM) [Pseudomonas amygdali pv. tabaci strain 6605]
GTGTTCGAACTCTTCAGTAAGAAGGCCAACACCCTTCTAGGGATCGATATTAGCTCCACCTCGGTAAAACTCCTGGAATT
GAGTCGTTCCGGCACTCGTTACAAGGTCGAGTCTTACGCAGTCGAGCCGTTGCCGGCCAACGCTGTCGTCGAAAAGAATA
TTGCCGAGCTTGAAGGGGTTGGTCAGGCGCTGTCTCGCGTGCTCGCCAAGGCCAAGACCAGCGTCAAGATCGTGGCGGTC
GCCGTAGCCGGTTCCGCCGTGATCACCAAGACGATTGAAATGGACGCCGGTCTTTCCGACGACGACATGGAAAACCAGCT
CAAGCTTGAGGCTGACCAGTACATCCCTTATCCGCTGGAAGAAGTCGCCATCGATTTCGAAGTGCAGGGCTACTCGGTGC
GCAATCCCGAACGCGTTGAAGTATTGCTGGCTGCCTGCCGCAAAGAGAACGTCGAAGTGCGTGAGGCGGCGCTGGCTCTG
GCCGGGCTGACCGCGCGCGTGGTGGACGTCGAGGCCTATGCCCTGGAGCGCTCGTTCGGCCTGCTGGCTGCGCAACTGGG
TAACGGCCATGACGAGCTTACCGTGGCGGTGGTCGATATCGGTGCCACCATGACCACCCTCAGCGTGCTGCATCATGGCC
GGATCATCTATACCCGCGAGCAACTGTTTGGTGGCCGCCAGCTGACTGACGAAATCCAGCGCCGCTATGGGCTTTCCATG
GAGGAGGCCGGGCTTGCCAAGAAGCAGGGCGGGTTGCCCGACGACTATGTCAGCGAGGTGCTGGACCCCTTCAAGGATGC
GTTGGTGCAGCAGGTCTCCCGTTCTTTGCAGTTCTTCTTTGCGGCCGGTCAATACAACTCCGTGGATCACATCATGCTGG
CAGGCGGCACGGCTTCGATTTCAGGGCTGGAGCATTTGATTCAACGACGCATTGGCACCCCGACGATGGTCGCCAACCCG
TTTGCCGACATGGCCCTGAGCTCCAAGGTCAATGCCGGGGCGCTGGCCAGTGACGCTCCCGCGTTGATGATCGCGTGCGG
TCTGGCGTTGAGGAGCTTCGACTGA

Domains

Predicted by InterproScan.

• Type IV pilus assembly protein PilM; (PilM_2) (14-353)

3D structure

• AlphaFold DB: A0A7Z6Y2Y4

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
pilM	Acinetobacter baumannii D1279779	56.215	100	0.562
comM	Acinetobacter nosocomialis M2	56.215	100	0.562
comM	Acinetobacter baylyi ADP1	53.672	100	0.537
pilM	Legionella pneumophila strain ERS1305867	46.761	100	0.469