Detailed information NTG0851825

Bioinformatically predicted

Overview

• Name: pilD
• Type: Machinery gene
• Locus tag: QX495_RS14760
• Genome accession: NZ_CP129239
• Coordinates: 3304018..3304863 (-)
• Length: 281 a.a.
• NCBI ID: WP_300993708.1
• Uniprot ID: -
• Organism: Pectobacterium aroidearum strain YKX
• Function: assembly of type IV pilus (predicted from homology) DNA binding and uptake

Genomic Context

Location: 3299018..3309863

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
QX495_RS14735 (QX495_14735)	-	3299073..3299843 (-)	771	WP_300993697.1	ABC transporter ATP-binding protein	-
QX495_RS14740 (QX495_14740)	-	3299845..3300882 (-)	1038	WP_256598749.1	iron ABC transporter permease	-
QX495_RS14745 (QX495_14745)	-	3300879..3301943 (-)	1065	WP_300993703.1	ABC transporter substrate-binding protein	-
QX495_RS14750 (QX495_14750)	-	3302419..3303444 (+)	1026	WP_015841037.1	LLM class flavin-dependent oxidoreductase	-
QX495_RS14755 (QX495_14755)	ypdK	3303801..3303875 (+)	75	WP_099606229.1	membrane protein YpdK	-
QX495_RS14760 (QX495_14760)	pilD	3304018..3304863 (-)	846	WP_300993708.1	A24 family peptidase	Machinery gene
QX495_RS14765 (QX495_14765)	-	3304971..3305717 (-)	747	WP_300993710.1	type II secretion system protein N	-
QX495_RS14770 (QX495_14770)	-	3305707..3306201 (-)	495	WP_181848776.1	type II secretion system protein M	-
QX495_RS14775 (QX495_14775)	gspL	3306198..3307475 (-)	1278	WP_300993712.1	type II secretion system protein GspL	-
QX495_RS14780 (QX495_14780)	gspK	3307472..3308458 (-)	987	WP_300993713.1	type II secretion system minor pseudopilin GspK	-
QX495_RS14785 (QX495_14785)	gspJ	3308455..3309105 (-)	651	WP_181829033.1	type II secretion system minor pseudopilin GspJ	-
QX495_RS14790 (QX495_14790)	gspI	3309105..3309470 (-)	366	WP_015841044.1	type II secretion system minor pseudopilin GspI	-

Sequence

Protein

• Length: 281 a.a.
• Molecular weight: 31275.40 Da
• Isoelectric Point: 7.1428

>NTDB_id=851825 QX495_RS14760 WP_300993708.1 3304018..3304863(-) (pilD) [Pectobacterium aroidearum strain YKX]
MDDLREFALVFPAWWYGALGVLGLIVGSFLNVVIYRLPIMLERRWRQDIELQTGVTDVEHVTSYNLCWPPSSCPHCQQAI
AVKDNIPLFSWLWLRGRSRCCHQPVSVQYPLVEVITMLAFLIAGLLWLPGMALCGALILLSFLVVLTVIDIKTLLLPDVL
TLSLLWMGLLFNLSETFVPLRDAVVGAMAGYLSLWLLYWVFKYATGKEALGYGDFKLLAALGAWLGWQALPNLVLVAALS
GLVVTLIWRGVRKEDTAKPLAFGPWLAIGGVFGVIINGLYL

Nucleotide

• Length: 846 bp

>NTDB_id=851825 QX495_RS14760 WP_300993708.1 3304018..3304863(-) (pilD) [Pectobacterium aroidearum strain YKX]
GTGGACGATTTAAGGGAATTCGCACTGGTATTTCCGGCATGGTGGTATGGTGCGCTGGGCGTATTGGGCTTGATTGTTGG
CAGTTTTCTGAACGTCGTGATTTACCGCCTGCCGATTATGTTAGAACGCCGCTGGCGGCAGGACATAGAGCTGCAAACGG
GTGTGACCGATGTCGAGCATGTGACGAGTTACAACCTATGTTGGCCGCCTTCGTCTTGCCCGCACTGTCAGCAGGCGATT
GCGGTGAAAGATAACATCCCGTTATTCAGCTGGCTGTGGCTGCGCGGCCGCTCCCGCTGCTGTCATCAGCCAGTGTCTGT
GCAGTATCCGCTGGTGGAAGTCATCACGATGCTGGCTTTTCTGATCGCAGGGTTACTGTGGCTGCCCGGCATGGCGTTAT
GCGGGGCGCTGATTCTGCTGTCCTTTCTGGTGGTTTTGACCGTCATTGATATAAAAACGTTACTGCTGCCAGATGTGCTT
ACGCTTTCGCTCTTGTGGATGGGACTGCTGTTTAATCTGTCGGAGACCTTTGTCCCATTACGCGATGCCGTAGTAGGCGC
GATGGCGGGCTATTTGTCCCTGTGGCTACTTTATTGGGTATTTAAATATGCCACAGGCAAAGAAGCGCTAGGGTATGGTG
ATTTTAAGTTACTCGCCGCGCTGGGGGCCTGGCTGGGCTGGCAGGCATTGCCGAATCTGGTCTTGGTGGCGGCGCTGAGC
GGGCTGGTCGTTACTCTCATTTGGCGCGGGGTGCGTAAAGAAGATACGGCTAAACCGTTGGCCTTTGGCCCTTGGCTGGC
GATTGGCGGCGTGTTCGGTGTGATAATAAACGGACTCTATCTGTAG

Domains

Predicted by InterproScan.

• Type IV leader peptidase family (Peptidase_A24) (137-245)

• Bacterial Peptidase A24 N-terminal domain (A24_N_bact) (21-123)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
pilD	Vibrio cholerae strain A1552	50.37	96.085	0.484
pilD	Neisseria gonorrhoeae MS11	48.617	90.036	0.438
pilD	Vibrio campbellii strain DS40M4	46.85	90.391	0.423
pilD	Acinetobacter baumannii D1279779	41.971	97.509	0.409
pilD	Acinetobacter nosocomialis M2	41.971	97.509	0.409