Detailed information    

insolico Bioinformatically predicted

Overview

Name   comL   Type   Machinery gene
Locus tag   QUE31_RS14880 Genome accession   NZ_AP027254
Coordinates   2956762..2957499 (+) Length   245 a.a.
NCBI ID   WP_000197684.1    Uniprot ID   -
Organism   Escherichia coli strain JNE120442     
Function   DNA binding (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2951762..2962499
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QUE31_RS14865 (JNE120442_28180) clpC 2952216..2954789 (-) 2574 WP_001317994.1 ATP-dependent chaperone ClpB Regulator
  QUE31_RS14870 (JNE120442_28190) yfiH 2954919..2955650 (-) 732 WP_000040126.1 purine nucleoside phosphorylase YfiH -
  QUE31_RS14875 (JNE120442_28200) rluD 2955647..2956627 (-) 981 WP_000079108.1 23S rRNA pseudouridine(1911/1915/1917) synthase RluD -
  QUE31_RS14880 (JNE120442_28210) comL 2956762..2957499 (+) 738 WP_000197684.1 outer membrane protein assembly factor BamD Machinery gene
  QUE31_RS14885 (JNE120442_28230) insG 2957603..2958950 (+) 1348 Protein_2921 IS4-like element IS4 family transposase -
  QUE31_RS14890 (JNE120442_28240) raiA 2959211..2959552 (+) 342 WP_000178456.1 ribosome-associated translation inhibitor RaiA -
  QUE31_RS14895 pheL 2959656..2959703 (+) 48 WP_001386991.1 pheA operon leader peptide PheL -
  QUE31_RS14900 (JNE120442_28250) pheA 2959802..2960962 (+) 1161 WP_000200129.1 bifunctional chorismate mutase/prephenate dehydratase -
  QUE31_RS14905 (JNE120442_28260) tyrA 2961005..2962126 (-) 1122 WP_000225233.1 bifunctional chorismate mutase/prephenate dehydrogenase -

Sequence

Protein


Download         Length: 245 a.a.        Molecular weight: 27811.36 Da        Isoelectric Point: 6.4874

>NTDB_id=85165 QUE31_RS14880 WP_000197684.1 2956762..2957499(+) (comL) [Escherichia coli strain JNE120442]
MTRMKYLVAAATLSLFLAGCSGSKEEVPDNPPNEIYATAQQKLQDGNWRQAITQLEALDNRYPFGPYSQQVQLDLIYAYY
KNADLPLAQAAIDRFIRLNPTHPNIDYVMYMRGLTNMALDDSALQGFFGVDRSDRDPQHARAAFSDFSKLVRGYPNSQYT
TDATKRLVFLKDRLAKYEYSVAEYYTERGAWVAVVNRVEGMLRDYPDTQATRDALPLMENAYRQMQLNAQAEKVAKIIAA
NSSNT

Nucleotide


Download         Length: 738 bp        

>NTDB_id=85165 QUE31_RS14880 WP_000197684.1 2956762..2957499(+) (comL) [Escherichia coli strain JNE120442]
ATGACGCGCATGAAATATCTGGTGGCAGCCGCCACACTAAGCCTGTTTTTGGCGGGTTGCTCGGGGTCAAAGGAAGAAGT
ACCTGATAATCCGCCAAATGAAATTTACGCGACTGCACAACAAAAGCTGCAGGACGGTAACTGGAGACAGGCAATAACGC
AACTGGAAGCGTTAGATAATCGCTATCCGTTTGGTCCGTATTCGCAGCAGGTGCAGCTGGATCTCATCTACGCCTACTAT
AAAAACGCCGATTTGCCGTTAGCACAGGCTGCCATCGATCGTTTTATTCGCCTTAACCCGACCCATCCGAATATCGATTA
TGTCATGTACATGCGTGGCCTGACCAATATGGCGCTGGATGACAGTGCGCTGCAAGGGTTCTTTGGCGTTGACCGTAGCG
ATCGCGATCCTCAACATGCACGAGCTGCGTTTAGTGACTTTTCCAAACTGGTGCGCGGCTATCCGAACAGTCAGTACACC
ACCGATGCCACCAAACGTCTGGTATTCCTGAAAGATCGTCTGGCGAAATATGAATACTCCGTTGCCGAGTACTATACAGA
ACGTGGTGCATGGGTTGCCGTCGTTAACCGCGTAGAAGGCATGTTGCGCGACTACCCGGATACCCAGGCTACGCGTGATG
CGCTGCCGCTGATGGAAAATGCATACCGTCAGATGCAGTTGAATGCGCAAGCTGAAAAAGTAGCGAAAATCATCGCCGCA
AACAGCAGCAATACATAA

Domains

Predicted by InterProScan.

Outer membrane lipoprotein (YfiO)

(28-236)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comL Neisseria meningitidis MC58

38.525

99.592

0.384
  comL Neisseria gonorrhoeae MS11

39.167

97.959

0.384

Multiple sequence alignment