Detailed information    

insolico Bioinformatically predicted

Overview

Name   luxO   Type   Regulator
Locus tag   V6S42_RS24145 Genome accession   NZ_CP145646
Coordinates   4981661..4983070 (+) Length   469 a.a.
NCBI ID   WP_022646353.1    Uniprot ID   -
Organism   Escherichia coli strain S1-IND-02-A     
Function   promote HapR production (predicted from homology)   
Competence regulation

Genomic Context

Location: 4976661..4988070
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  V6S42_RS24130 (V6S42_24130) typA 4976821..4978644 (-) 1824 WP_000570668.1 ribosome-dependent GTPase TypA -
  V6S42_RS24135 (V6S42_24135) glnA 4979017..4980426 (+) 1410 WP_001271717.1 glutamate--ammonia ligase -
  V6S42_RS24140 (V6S42_24140) glnL 4980600..4981649 (+) 1050 WP_000190577.1 nitrogen regulation protein NR(II) -
  V6S42_RS24145 (V6S42_24145) luxO 4981661..4983070 (+) 1410 WP_022646353.1 nitrogen regulation protein NR(I) Regulator
  V6S42_RS24150 (V6S42_24150) yshB 4983182..4983292 (+) 111 WP_000893994.1 YshB family small membrane protein -
  V6S42_RS24155 (V6S42_24155) hemN 4983521..4984894 (-) 1374 WP_001590951.1 oxygen-independent coproporphyrinogen III oxidase -
  V6S42_RS24160 (V6S42_24160) yihI 4985083..4985592 (-) 510 WP_001572146.1 Der GTPase-activating protein YihI -
  V6S42_RS24165 (V6S42_24165) - 4985711..4985877 (-) 167 Protein_4729 hypothetical protein -
  V6S42_RS24170 (V6S42_24170) yihA 4986174..4986806 (+) 633 WP_000183349.1 ribosome biogenesis GTP-binding protein YihA/YsxC -

Sequence

Protein


Download         Length: 469 a.a.        Molecular weight: 52261.73 Da        Isoelectric Point: 6.4081

>NTDB_id=851562 V6S42_RS24145 WP_022646353.1 4981661..4983070(+) (luxO) [Escherichia coli strain S1-IND-02-A]
MQRGIVWVVDDDSSIRWVLERALAGAGLTCTTFENGAEVLEALASKTPDVLLSDIRMPGMDGLALLKQIKQRHPMLPVII
MTAHSDLDAAVSAYQQGAFDYLPKPFDIDEAVALVERAISHYQEQQQPRNVQLNGPTTDIIGEAPAMQDVFRIIGRLSRS
SISVLINGESGTGKELVAHALHRHSPRAKAPFIALNMAAIPKDLIESELFGHEKGAFTGANTIRQGRFEQADGGTLFLDE
IGDMPLDVQTRLLRVLADGQFYRVGGYAPVKVDVRIIAATHQNLEQRVQEGKFREDLFHRLNVIRVHLPPLRERREDIPR
LAHHFLQVAARELGVEAKLLHPETEAALTRLAWPGNVRQLENTCRWLTVMAAGQEVLIQDLPGELFESTVPESTSQMQPD
SWATLLAQWADRALRSGHQNLLSEAQPELERTLLTTALRHTQGHKQEAARLLGWGRNTLTRKLKELGME

Nucleotide


Download         Length: 1410 bp        

>NTDB_id=851562 V6S42_RS24145 WP_022646353.1 4981661..4983070(+) (luxO) [Escherichia coli strain S1-IND-02-A]
ATGCAACGAGGGATAGTCTGGGTAGTCGATGACGATAGTTCCATCCGTTGGGTGCTTGAACGTGCGCTCGCTGGAGCGGG
TTTAACCTGTACGACATTTGAGAACGGCGCGGAAGTACTGGAGGCGTTGGCGAGCAAAACGCCGGATGTACTGCTTTCAG
ATATCCGTATGCCGGGAATGGACGGGCTGGCGCTGCTCAAGCAGATTAAACAGCGCCATCCAATGCTTCCGGTCATCATT
ATGACCGCACATTCCGATCTGGATGCTGCCGTCAGCGCCTATCAACAAGGGGCGTTTGATTATCTGCCCAAACCGTTTGA
TATCGACGAAGCCGTGGCGCTGGTTGAGCGCGCCATCAGTCATTATCAGGAACAGCAGCAGCCGCGTAATGTTCAGCTTA
ACGGCCCAACGACCGATATCATCGGCGAAGCGCCAGCCATGCAGGACGTGTTCCGTATTATCGGTCGACTTTCGCGTTCT
TCCATTAGCGTGCTGATCAACGGCGAATCCGGCACTGGTAAAGAACTGGTCGCTCATGCCCTGCATCGCCACAGCCCGCG
AGCCAAAGCGCCGTTTATCGCGCTCAATATGGCGGCTATCCCGAAGGATTTGATCGAATCAGAACTGTTTGGTCACGAGA
AAGGCGCGTTTACCGGCGCGAATACCATTCGTCAGGGGCGTTTTGAACAAGCCGATGGCGGCACGTTATTTCTCGATGAA
ATTGGCGATATGCCGCTGGATGTGCAGACGCGTTTGCTGCGCGTGCTGGCAGACGGTCAGTTTTATCGCGTTGGCGGCTA
TGCACCGGTGAAAGTGGATGTGCGGATTATCGCTGCCACTCACCAGAATCTCGAACAGCGGGTGCAGGAAGGCAAGTTCC
GTGAGGATCTGTTCCACCGCCTGAACGTCATCCGTGTTCATCTGCCGCCGCTGCGTGAGCGTCGGGAAGATATTCCCCGT
CTGGCACACCATTTTTTACAAGTTGCTGCTCGCGAGCTGGGCGTAGAAGCAAAGTTGCTGCATCCGGAAACTGAAGCCGC
TCTGACGCGTCTGGCGTGGCCAGGCAACGTGCGCCAGCTGGAAAACACCTGCCGCTGGCTAACGGTAATGGCTGCCGGAC
AGGAAGTGTTGATTCAGGATTTGCCTGGCGAACTGTTTGAATCAACCGTACCGGAAAGCACTTCACAAATGCAGCCGGAC
AGTTGGGCAACGCTGTTAGCACAGTGGGCAGATCGGGCGCTACGTTCCGGTCATCAAAACTTGCTGTCTGAAGCGCAACC
AGAGTTGGAGCGGACGTTACTGACGACCGCGTTGCGACATACGCAGGGGCATAAACAGGAAGCGGCGCGGCTACTCGGCT
GGGGGCGTAACACTCTGACGCGGAAGTTAAAAGAGCTGGGAATGGAGTGA

Domains

Predicted by InterProScan.

Response regulator receiver domain (Response_reg)

(6-115)

Bacterial regulatory protein, Fis family (HTH_8)

(427-466)

Sigma-54 interaction domain (Sigma54_activat)

(140-306)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  luxO Vibrio cholerae strain A1552

39.655

98.934

0.392
  pilR Pseudomonas aeruginosa PAK

38.854

100

0.39