Detailed information
Bioinformatically predicted
Overview
| Name | pilD | Type | Machinery gene |
| Locus tag | QYE79_RS23335 | Genome accession | NZ_CP129200 |
| Coordinates | 4948426..4949298 (-) | Length | 290 a.a. |
| NCBI ID | WP_034007824.1 | Uniprot ID | - |
| Organism | Pseudomonas aeruginosa strain PA942 | ||
| Function | assembly of type IV pilus (predicted from homology) DNA binding and uptake |
||
Genomic Context
Location: 4943426..4954298
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| QYE79_RS23290 (QYE79_23290) | - | 4944287..4944457 (-) | 171 | WP_003094672.1 | DUF3094 family protein | - |
| QYE79_RS23295 (QYE79_23295) | - | 4944483..4944932 (-) | 450 | WP_023105574.1 | MOSC domain-containing protein | - |
| QYE79_RS23300 (QYE79_23300) | - | 4944929..4945558 (-) | 630 | WP_003094668.1 | DUF1780 domain-containing protein | - |
| QYE79_RS23305 (QYE79_23305) | - | 4945691..4946116 (+) | 426 | WP_003103865.1 | GNAT family N-acetyltransferase | - |
| QYE79_RS23310 (QYE79_23310) | - | 4946113..4946583 (+) | 471 | WP_003094664.1 | hypothetical protein | - |
| QYE79_RS23315 (QYE79_23315) | - | 4946580..4947269 (+) | 690 | WP_003103868.1 | energy-coupling factor ABC transporter permease | - |
| QYE79_RS23320 (QYE79_23320) | - | 4947375..4947584 (+) | 210 | WP_003094660.1 | hypothetical protein | - |
| QYE79_RS23325 (QYE79_23325) | yacG | 4947621..4947821 (-) | 201 | WP_003094656.1 | DNA gyrase inhibitor YacG | - |
| QYE79_RS23330 (QYE79_23330) | coaE | 4947818..4948429 (-) | 612 | WP_003094654.1 | dephospho-CoA kinase | - |
| QYE79_RS23335 (QYE79_23335) | pilD | 4948426..4949298 (-) | 873 | WP_034007824.1 | type IV prepilin peptidase/methyltransferase PilD | Machinery gene |
| QYE79_RS23340 (QYE79_23340) | pilC | 4949301..4950518 (-) | 1218 | WP_016254080.1 | type II secretion system F family protein | Machinery gene |
| QYE79_RS23345 (QYE79_23345) | pilB | 4950522..4952225 (-) | 1704 | WP_003116249.1 | type IV-A pilus assembly ATPase PilB | Machinery gene |
| QYE79_RS23350 (QYE79_23350) | - | 4952454..4952993 (+) | 540 | WP_031285592.1 | pilin | - |
| QYE79_RS23355 (QYE79_23355) | - | 4953198..4953755 (+) | 558 | WP_225011032.1 | hypothetical protein | - |
Sequence
Protein
Download Length: 290 a.a. Molecular weight: 31825.82 Da Isoelectric Point: 7.0816
>NTDB_id=851485 QYE79_RS23335 WP_034007824.1 4948426..4949298(-) (pilD) [Pseudomonas aeruginosa strain PA942]
MELLDYLASHPLAFVLCAILLGLLVGSFLNVVVHRLPKMMERNWKAEAREALGLEPEPKQATYNLVLPSSACPHCGHEIR
PWENIPLVSYLALGGKCSSCKAAIGKRYPLVELATALLSGYVAWHFGFTWQAGAMLLLTWGLLAMSLIDADHQLLPDVLV
LPLLWLGLIANHFGLFASLDDALFGAVFGYLSLWSVFWLFKLVTGKEGMGYGDFKLLAMLGAWGGWQILPLTILLSSLVG
AILGVIMLRLRNAESGTPIPFGPYLAIAGWIALLWGDQITRTYLQFAGFK
MELLDYLASHPLAFVLCAILLGLLVGSFLNVVVHRLPKMMERNWKAEAREALGLEPEPKQATYNLVLPSSACPHCGHEIR
PWENIPLVSYLALGGKCSSCKAAIGKRYPLVELATALLSGYVAWHFGFTWQAGAMLLLTWGLLAMSLIDADHQLLPDVLV
LPLLWLGLIANHFGLFASLDDALFGAVFGYLSLWSVFWLFKLVTGKEGMGYGDFKLLAMLGAWGGWQILPLTILLSSLVG
AILGVIMLRLRNAESGTPIPFGPYLAIAGWIALLWGDQITRTYLQFAGFK
Nucleotide
Download Length: 873 bp
>NTDB_id=851485 QYE79_RS23335 WP_034007824.1 4948426..4949298(-) (pilD) [Pseudomonas aeruginosa strain PA942]
ATGGAACTCCTCGACTACCTGGCCAGCCATCCGCTGGCCTTTGTCTTGTGCGCCATCCTCCTTGGCCTGCTGGTCGGCAG
CTTCCTCAACGTCGTCGTGCATCGCCTGCCGAAGATGATGGAGCGCAACTGGAAGGCCGAGGCCCGCGAAGCGCTCGGGC
TGGAGCCAGAACCCAAGCAGGCGACCTACAACCTGGTGCTGCCGAGTTCGGCGTGCCCGCACTGCGGCCACGAGATCCGC
CCCTGGGAAAACATCCCGCTGGTCAGCTACCTGGCGCTGGGCGGCAAGTGCTCGTCCTGCAAGGCCGCCATCGGCAAACG
CTACCCCCTGGTGGAACTGGCCACCGCGCTGCTTTCCGGCTATGTCGCCTGGCATTTCGGCTTCACCTGGCAGGCGGGCG
CGATGCTCCTGCTGACCTGGGGCCTGCTGGCGATGAGCCTGATCGATGCCGATCACCAACTGCTGCCGGACGTGCTGGTG
CTGCCGCTGCTCTGGCTGGGTCTGATCGCCAACCATTTCGGCCTCTTCGCCAGCCTCGACGATGCGCTGTTCGGCGCGGT
GTTCGGCTACCTGAGCCTGTGGTCGGTGTTCTGGCTGTTCAAGCTGGTGACCGGCAAGGAGGGCATGGGCTACGGCGACT
TCAAGCTGCTGGCCATGCTCGGTGCCTGGGGCGGCTGGCAGATCCTGCCGCTGACCATCCTGCTGTCGTCGCTGGTCGGG
GCGATCCTCGGGGTGATCATGCTGCGCCTGCGCAACGCCGAAAGCGGCACGCCGATCCCCTTCGGTCCCTATCTGGCGAT
TGCCGGGTGGATTGCTTTGCTCTGGGGTGATCAAATAACCCGGACCTATCTGCAATTCGCCGGATTCAAATGA
ATGGAACTCCTCGACTACCTGGCCAGCCATCCGCTGGCCTTTGTCTTGTGCGCCATCCTCCTTGGCCTGCTGGTCGGCAG
CTTCCTCAACGTCGTCGTGCATCGCCTGCCGAAGATGATGGAGCGCAACTGGAAGGCCGAGGCCCGCGAAGCGCTCGGGC
TGGAGCCAGAACCCAAGCAGGCGACCTACAACCTGGTGCTGCCGAGTTCGGCGTGCCCGCACTGCGGCCACGAGATCCGC
CCCTGGGAAAACATCCCGCTGGTCAGCTACCTGGCGCTGGGCGGCAAGTGCTCGTCCTGCAAGGCCGCCATCGGCAAACG
CTACCCCCTGGTGGAACTGGCCACCGCGCTGCTTTCCGGCTATGTCGCCTGGCATTTCGGCTTCACCTGGCAGGCGGGCG
CGATGCTCCTGCTGACCTGGGGCCTGCTGGCGATGAGCCTGATCGATGCCGATCACCAACTGCTGCCGGACGTGCTGGTG
CTGCCGCTGCTCTGGCTGGGTCTGATCGCCAACCATTTCGGCCTCTTCGCCAGCCTCGACGATGCGCTGTTCGGCGCGGT
GTTCGGCTACCTGAGCCTGTGGTCGGTGTTCTGGCTGTTCAAGCTGGTGACCGGCAAGGAGGGCATGGGCTACGGCGACT
TCAAGCTGCTGGCCATGCTCGGTGCCTGGGGCGGCTGGCAGATCCTGCCGCTGACCATCCTGCTGTCGTCGCTGGTCGGG
GCGATCCTCGGGGTGATCATGCTGCGCCTGCGCAACGCCGAAAGCGGCACGCCGATCCCCTTCGGTCCCTATCTGGCGAT
TGCCGGGTGGATTGCTTTGCTCTGGGGTGATCAAATAACCCGGACCTATCTGCAATTCGCCGGATTCAAATGA
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| pilD | Vibrio cholerae strain A1552 |
55.363 |
99.655 |
0.552 |
| pilD | Vibrio campbellii strain DS40M4 |
53.497 |
98.621 |
0.528 |
| pilD | Acinetobacter nosocomialis M2 |
50.352 |
97.931 |
0.493 |
| pilD | Acinetobacter baumannii D1279779 |
50.352 |
97.931 |
0.493 |
| pilD | Neisseria gonorrhoeae MS11 |
49.281 |
95.862 |
0.472 |