Detailed information    

insolico Bioinformatically predicted

Overview


Name   eeP   Type   Regulator
Locus tag   LLD17_RS12390 Genome accession   NZ_CP129182
Coordinates   2264443..2265729 (-) Length   428 a.a.
NCBI ID   WP_081196895.1    Uniprot ID   -
Organism   Lactococcus cremoris strain D.1.7     
Function   processing of ComS (predicted from homology)   
Competence regulation

Genomic Context


Location: 2259443..2270729
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LLD17_RS12370 - 2259948..2260541 (-) 594 Protein_2269 PolC-type DNA polymerase III N-terminal domain-containing protein -
  LLD17_RS12375 (LLD17_12420) - 2260715..2260906 (-) 192 WP_021211222.1 hypothetical protein -
  LLD17_RS12380 (LLD17_12425) - 2261176..2262507 (-) 1332 WP_081196894.1 FAD/NAD(P)-binding oxidoreductase -
  LLD17_RS12385 (LLD17_12430) - 2262523..2264373 (-) 1851 WP_011836051.1 proline--tRNA ligase -
  LLD17_RS12390 (LLD17_12435) eeP 2264443..2265729 (-) 1287 WP_081196895.1 RIP metalloprotease RseP Regulator
  LLD17_RS12395 (LLD17_12440) - 2265748..2266551 (-) 804 WP_011677190.1 phosphatidate cytidylyltransferase -
  LLD17_RS12400 (LLD17_12445) - 2266551..2267285 (-) 735 WP_081196896.1 isoprenyl transferase -
  LLD17_RS12405 (LLD17_12450) yajC 2267635..2267967 (-) 333 WP_011677192.1 preprotein translocase subunit YajC -
  LLD17_RS12410 (LLD17_12455) - 2268062..2268760 (-) 699 Protein_2277 DNA alkylation repair protein -
  LLD17_RS12415 (LLD17_12460) rlmH 2268778..2269257 (-) 480 WP_021164969.1 23S rRNA (pseudouridine(1915)-N(3))-methyltransferase RlmH -

Sequence


Protein


Download         Length: 428 a.a.        Molecular weight: 46473.07 Da        Isoelectric Point: 6.5140

>NTDB_id=851416 LLD17_RS12390 WP_081196895.1 2264443..2265729(-) (eeP) [Lactococcus cremoris strain D.1.7]
MIETLITFIIIFGIIVAIHEYGHLWWAKRSGILVREYAVGMGPKIFAHQAKDGTLYTIRILPLGGYVRLAGWGDDKTEIK
KGQAASLVVSKSEAVNSGDENSVSNIVRRINLSEHVELEEAVPMLITEYDFEKELFIEGEVFGEIKRYSVDHDATIIEED
GTEVRIVPLDVQYQSAGVFHKMLTNFGGPLNNFILGLVAFIVLTFIQGGVPSNSNAIGQVEKGTPAYTAGLKSGDKIQAV
NGTKTADWDKLVTEISSSNGKELKLEIIRSGKSETLAVTPKKMDGSYRVGIMQSMKTGFFDKITGGFVQAGQATTAIFRA
LGSLIARPSLDKLGGPVAIYQLSGQAARAGLPTIIQLLAMLSINLGIVNLFPIPMLDGGKIVLNIIEAIRGKALSPEKES
IITLVGVVFMLVLFMAVTWNDILRAFVN

Nucleotide


Download         Length: 1287 bp        

>NTDB_id=851416 LLD17_RS12390 WP_081196895.1 2264443..2265729(-) (eeP) [Lactococcus cremoris strain D.1.7]
TTGATAGAAACTCTGATTACTTTTATTATTATTTTTGGTATTATTGTCGCTATTCATGAATATGGTCACCTTTGGTGGGC
AAAACGTTCTGGAATTCTAGTGCGTGAATATGCCGTAGGAATGGGGCCGAAGATTTTTGCTCATCAAGCAAAAGATGGAA
CGCTCTACACGATTCGAATTTTACCGCTTGGTGGCTATGTTCGTTTGGCCGGCTGGGGTGATGATAAAACTGAAATAAAA
AAAGGACAAGCTGCAAGTCTGGTTGTCAGTAAATCTGAAGCAGTAAATTCAGGAGATGAAAATTCTGTCAGTAATATTGT
CAGAAGAATTAATCTGTCAGAACATGTGGAATTAGAAGAAGCTGTTCCAATGTTAATCACTGAATATGATTTTGAAAAAG
AACTTTTCATTGAAGGAGAAGTGTTTGGAGAAATCAAACGTTATTCAGTTGACCATGATGCCACAATTATTGAAGAAGAT
GGCACTGAAGTCCGGATTGTTCCTCTTGATGTTCAATATCAATCAGCAGGGGTCTTCCATAAGATGTTGACGAATTTCGG
TGGTCCTTTGAATAACTTTATTCTAGGACTTGTCGCTTTTATCGTTTTAACTTTTATTCAAGGAGGCGTTCCATCAAATT
CTAATGCTATTGGGCAAGTAGAAAAAGGAACACCAGCCTACACCGCAGGCTTGAAATCTGGAGATAAAATTCAAGCTGTC
AATGGAACTAAAACAGCAGATTGGGATAAATTGGTCACAGAAATTTCAAGTTCTAATGGAAAAGAATTAAAACTTGAAAT
TATCCGCTCAGGCAAATCAGAAACTTTGGCAGTTACCCCTAAAAAGATGGATGGCAGTTATCGTGTTGGAATCATGCAAT
CTATGAAAACAGGCTTCTTTGATAAAATTACAGGTGGTTTTGTTCAAGCAGGACAAGCGACCACAGCAATTTTCAGAGCA
TTAGGAAGTCTGATTGCACGACCGAGTCTTGATAAACTGGGTGGGCCAGTTGCCATCTATCAACTCAGCGGACAAGCGGC
AAGAGCAGGTTTGCCAACAATTATTCAGTTGTTAGCTATGCTCTCGATTAACTTAGGAATTGTCAATCTTTTCCCTATTC
CAATGCTTGACGGTGGAAAAATCGTCTTAAATATTATTGAAGCAATTCGTGGCAAAGCACTTTCGCCTGAGAAAGAATCA
ATTATCACATTAGTCGGAGTTGTCTTCATGCTTGTGCTCTTTATGGCTGTAACATGGAATGACATTCTACGGGCTTTTGT
CAACTAA

Domains


Predicted by InterproScan.

(217-279)

(7-413)


Secondary structure


Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure


Source ID Structure

Transmembrane helices


Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.



Visualization of predicted probability:


Similar proteins


Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  eeP Streptococcus thermophilus LMG 18311

55.916

100

0.563

  eeP Streptococcus thermophilus LMD-9

55.684

100

0.561