Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   LLUC029_RS12340 Genome accession   NZ_CP129163
Coordinates   2362663..2363163 (-) Length   166 a.a.
NCBI ID   WP_011677241.1    Uniprot ID   A0A0M2ZSZ2
Organism   Lactococcus cremoris strain UC029     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 2357663..2368163
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LLUC029_RS12310 (LLUC029_12325) - 2357877..2359261 (+) 1385 WP_332372292.1 IS3 family transposase -
  LLUC029_RS12315 (LLUC029_12330) - 2359316..2359699 (-) 384 Protein_2393 NAD(P)-binding domain-containing protein -
  LLUC029_RS12320 (LLUC029_12335) - 2360062..2360910 (+) 849 WP_011677238.1 MurR/RpiR family transcriptional regulator -
  LLUC029_RS12325 (LLUC029_12340) - 2360949..2361257 (+) 309 WP_011836103.1 DUF960 domain-containing protein -
  LLUC029_RS12330 (LLUC029_12345) - 2361330..2362115 (-) 786 WP_021164832.1 metallophosphoesterase -
  LLUC029_RS12335 (LLUC029_12350) rpsR 2362246..2362491 (-) 246 WP_032951397.1 30S ribosomal protein S18 -
  LLUC029_RS12340 (LLUC029_12355) ssb 2362663..2363163 (-) 501 WP_011677241.1 single-stranded DNA-binding protein Machinery gene
  LLUC029_RS12345 (LLUC029_12360) rpsF 2363193..2363486 (-) 294 WP_011677242.1 30S ribosomal protein S6 -
  LLUC029_RS12350 (LLUC029_12365) - 2363680..2364534 (-) 855 WP_021164831.1 undecaprenyl-diphosphate phosphatase -
  LLUC029_RS12355 (LLUC029_12370) - 2365056..2366504 (+) 1449 WP_032951396.1 amino acid permease -

Sequence

Protein


Download         Length: 166 a.a.        Molecular weight: 18233.05 Da        Isoelectric Point: 5.2166

>NTDB_id=851372 LLUC029_RS12340 WP_011677241.1 2362663..2363163(-) (ssb) [Lactococcus cremoris strain UC029]
MINNVVLVGRITRDPELRYTPQNQAVATFSLAVNRQFKNANGEREADFINCVIWRQQAENLANWAKKGALIGVTGRIQTR
NYENQQGQRVYVTEVVADSFQMLESRSARDGMGGGASAGSYSAPSQSTNNTPRPQTNNNSATPNFGRDADPFGSSPMEIS
DDDLPF

Nucleotide


Download         Length: 501 bp        

>NTDB_id=851372 LLUC029_RS12340 WP_011677241.1 2362663..2363163(-) (ssb) [Lactococcus cremoris strain UC029]
ATGATTAACAATGTTGTATTAGTGGGACGCATTACTCGCGATCCTGAACTTCGTTACACCCCTCAAAATCAAGCTGTTGC
TACTTTTTCATTGGCTGTAAATCGTCAATTTAAAAATGCTAACGGTGAACGTGAGGCTGATTTCATTAACTGCGTTATTT
GGCGCCAACAAGCTGAAAATTTGGCAAATTGGGCTAAAAAAGGAGCTTTGATCGGTGTAACTGGTCGAATTCAAACACGT
AATTATGAAAATCAACAAGGTCAACGCGTTTATGTGACTGAGGTTGTGGCTGATAGTTTCCAAATGTTGGAAAGTAGATC
TGCTCGCGATGGTATGGGAGGCGGAGCTTCTGCCGGTTCATATTCTGCACCAAGCCAATCTACAAATAATACTCCACGTC
CACAAACGAATAATAATAGTGCAACACCGAATTTCGGTCGTGATGCTGACCCATTTGGTAGCTCACCTATGGAAATCTCG
GATGATGACCTTCCATTCTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(2-103)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A0M2ZSZ2

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Latilactobacillus sakei subsp. sakei 23K

59.884

100

0.62
  ssbA Bacillus subtilis subsp. subtilis str. 168

56.395

100

0.584
  ssbB Bacillus subtilis subsp. subtilis str. 168

58.491

63.855

0.373
  ssb Glaesserella parasuis strain SC1401

33.898

100

0.361