Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilX   Type   Machinery gene
Locus tag   FLY89_RS17630 Genome accession   NZ_AP024415
Coordinates   3643609..3644427 (-) Length   272 a.a.
NCBI ID   WP_000149374.1    Uniprot ID   N9LAR9
Organism   Acinetobacter baumannii strain NIPH17_0019     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3638609..3649427
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  FLY89_RS17615 (KHAB170019_35150) pilE 3638826..3639251 (-) 426 WP_000788342.1 type IV pilin protein Machinery gene
  FLY89_RS17620 (KHAB170019_35160) pilY2 3639248..3639730 (-) 483 WP_001046420.1 type IV pilin protein Machinery gene
  FLY89_RS17625 (KHAB170019_35170) pilY1 3639743..3643597 (-) 3855 WP_000768970.1 PilC/PilY family type IV pilus protein Machinery gene
  FLY89_RS17630 (KHAB170019_35180) pilX 3643609..3644427 (-) 819 WP_000149374.1 PilX N-terminal domain-containing pilus assembly protein Machinery gene
  FLY89_RS17635 (KHAB170019_35190) pilW 3644424..3645425 (-) 1002 WP_000079200.1 PilW family protein Machinery gene
  FLY89_RS17640 (KHAB170019_35200) pilV 3645426..3645986 (-) 561 WP_085916952.1 type IV pilus modification protein PilV Machinery gene
  FLY89_RS17645 (KHAB170019_35210) fimU 3645980..3646453 (-) 474 WP_001214061.1 Tfp pilus assembly protein FimT/FimU Machinery gene
  FLY89_RS17650 (KHAB170019_35220) ispH 3646623..3647573 (-) 951 WP_000407064.1 4-hydroxy-3-methylbut-2-enyl diphosphate reductase -
  FLY89_RS17655 (KHAB170019_35230) gmk 3647696..3648325 (+) 630 WP_000015937.1 guanylate kinase -
  FLY89_RS17660 (KHAB170019_35240) rpoZ 3648398..3648676 (+) 279 WP_000135049.1 DNA-directed RNA polymerase subunit omega -
  FLY89_RS17665 - 3648715..3648844 (+) 130 Protein_3467 hypothetical protein -

Sequence

Protein


Download         Length: 272 a.a.        Molecular weight: 28832.66 Da        Isoelectric Point: 5.6905

>NTDB_id=85135 FLY89_RS17630 WP_000149374.1 3643609..3644427(-) (pilX) [Acinetobacter baumannii strain NIPH17_0019]
MTHLNYKNIKGRSKETGATLIVVLIILLIVISVGVLAIRVAIVSLKVATNSQVGQLNFQSSDTPLELIVQMNPTTLTNIT
NVIGAALKAHESNPGAEYNFCYKPTSTSVSFAQTRGASLLRAGSANNAVVEDGGVAGFCDLTSDYGSNRQAVVTQVAVSI
PTDAMADIPGSNLPRDINLSEGTQLPKSMLSTQRIRVITTAFLPAYASTSLETLQSDCLSTSSAKISDNFDSALTDKQTL
ADCLANHNVPFSTQVQEFNYTNKLTEITAPGS

Nucleotide


Download         Length: 819 bp        

>NTDB_id=85135 FLY89_RS17630 WP_000149374.1 3643609..3644427(-) (pilX) [Acinetobacter baumannii strain NIPH17_0019]
ATGACCCATTTAAATTATAAAAATATTAAAGGTCGATCTAAGGAAACGGGTGCCACACTTATTGTTGTACTTATTATTTT
ATTGATTGTTATTTCTGTCGGGGTTTTGGCAATAAGAGTAGCGATTGTTTCTCTAAAAGTTGCAACTAATAGCCAAGTTG
GCCAATTAAACTTTCAATCTTCAGATACTCCGTTAGAGCTTATTGTACAGATGAACCCAACCACATTGACAAATATTACC
AATGTGATTGGAGCAGCACTGAAAGCACATGAAAGTAACCCTGGTGCGGAATATAACTTTTGCTATAAACCAACTTCTAC
ATCTGTAAGTTTTGCTCAAACTCGGGGGGCAAGTTTGCTTCGAGCTGGCAGCGCTAATAATGCTGTGGTTGAAGATGGTG
GAGTAGCAGGTTTCTGCGATTTAACAAGTGACTATGGGAGTAATCGTCAAGCGGTAGTTACTCAAGTTGCTGTCAGTATC
CCAACCGATGCCATGGCTGATATTCCGGGTTCAAATCTACCTCGGGACATAAATCTTTCCGAAGGAACCCAACTTCCTAA
AAGCATGCTATCTACGCAACGTATCCGGGTTATTACAACAGCGTTTTTACCTGCTTATGCCTCAACTTCTTTAGAAACTC
TGCAATCTGATTGCTTAAGTACGAGTTCCGCAAAAATTAGTGACAACTTTGATAGTGCATTAACGGATAAGCAAACTCTA
GCTGATTGTTTGGCAAACCATAATGTACCTTTTAGTACTCAAGTTCAAGAATTTAACTATACCAATAAGCTGACTGAAAT
CACGGCACCAGGTTCATAA

Domains


No domain identified.



Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB N9LAR9

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilX Acinetobacter baumannii D1279779

99.265

100

0.993

Multiple sequence alignment