Detailed information    

insolico Bioinformatically predicted

Overview

Name   phrF   Type   Regulator
Locus tag   QWI19_RS19245 Genome accession   NZ_CP129123
Coordinates   3712012..3712131 (+) Length   39 a.a.
NCBI ID   WP_009968329.1    Uniprot ID   A0A199WEM2
Organism   Bacillus subtilis strain 6D1     
Function   antagonize RapF (predicted from homology)   
Competence regulation

Genomic Context

Location: 3707012..3717131
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QWI19_RS19225 albG 3707176..3707877 (+) 702 WP_015250988.1 antilisterial bacteriocin subtilosin biosynthesis protein AlbG -
  QWI19_RS19230 ywhL 3707883..3709259 (-) 1377 WP_015250987.1 YncE family protein -
  QWI19_RS19235 ywhK 3709298..3710653 (-) 1356 WP_015250986.1 YncE family protein -
  QWI19_RS19240 rapF 3710883..3712028 (+) 1146 WP_015250985.1 response regulator aspartate phosphatase RapF Regulator
  QWI19_RS19245 phrF 3712012..3712131 (+) 120 WP_009968329.1 phosphatase RapF inhibitor PhrF Regulator
  QWI19_RS19250 ywhH 3712229..3712691 (+) 463 Protein_3733 YbaK/EbsC family protein -
  QWI19_RS19255 speB 3712723..3713595 (-) 873 WP_015250983.1 agmatinase -
  QWI19_RS19260 speE 3713656..3714486 (-) 831 WP_003227543.1 spermidine synthase -
  QWI19_RS19265 pbpG 3714688..3716763 (+) 2076 WP_048654792.1 transglycosylase domain-containing protein -

Sequence

Protein


Download         Length: 39 a.a.        Molecular weight: 4199.10 Da        Isoelectric Point: 10.4997

>NTDB_id=851242 QWI19_RS19245 WP_009968329.1 3712012..3712131(+) (phrF) [Bacillus subtilis strain 6D1]
MKLKSKLLLSCLALSTVFVATTIANAPTHQIEVAQRGMI

Nucleotide


Download         Length: 120 bp        

>NTDB_id=851242 QWI19_RS19245 WP_009968329.1 3712012..3712131(+) (phrF) [Bacillus subtilis strain 6D1]
ATGAAATTGAAGTCTAAACTATTACTCTCTTGTCTGGCTCTAAGCACTGTGTTCGTGGCAACAACTATTGCAAATGCACC
TACACACCAAATTGAAGTTGCACAACGAGGAATGATTTAA

Domains

Predicted by InterproScan.

Rap-phr extracellular signalling (PhrC_PhrF)

(3-39)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A199WEM2

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  phrF Bacillus subtilis subsp. subtilis str. 168

100

100

1
  phrC Bacillus subtilis subsp. subtilis str. 168

48.718

100

0.487