Detailed information    

insolico Bioinformatically predicted

Overview

Name   degU   Type   Regulator
Locus tag   QWI19_RS18155 Genome accession   NZ_CP129123
Coordinates   3491296..3491985 (-) Length   229 a.a.
NCBI ID   WP_003219701.1    Uniprot ID   G4P1D5
Organism   Bacillus subtilis strain 6D1     
Function   activation of comK (predicted from homology)   
Competence regulation

Genomic Context

Location: 3486296..3496985
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QWI19_RS18120 flgN 3486476..3486958 (-) 483 WP_003227999.1 flagellar protein FlgN -
  QWI19_RS18125 flgM 3486974..3487240 (-) 267 WP_003227997.1 flagellar biosynthesis anti-sigma factor FlgM -
  QWI19_RS18130 yvyF 3487321..3487740 (-) 420 WP_003227995.1 TIGR03826 family flagellar region protein -
  QWI19_RS18135 comFC 3487814..3488536 (-) 723 WP_003227991.1 comF operon protein ComFC Machinery gene
  QWI19_RS18140 comFB 3488500..3488796 (-) 297 WP_003227989.1 late competence protein ComFB -
  QWI19_RS18145 comFA 3488856..3490247 (-) 1392 WP_003243962.1 ATP-dependent helicase ComFA Machinery gene
  QWI19_RS18150 fakBA 3490353..3491198 (-) 846 WP_003244125.1 DegV family protein -
  QWI19_RS18155 degU 3491296..3491985 (-) 690 WP_003219701.1 two-component system response regulator DegU Regulator
  QWI19_RS18160 degS 3492068..3493225 (-) 1158 WP_003227983.1 two-component sensor histidine kinase DegS Regulator
  QWI19_RS18165 yvyE 3493442..3494095 (+) 654 WP_003227979.1 YigZ family protein -
  QWI19_RS18170 tagV 3494095..3495270 (+) 1176 WP_015251114.1 polyisoprenyl-teichoic acid--peptidoglycan teichoic acid transferase TagV -
  QWI19_RS18175 tagO 3495344..3496420 (-) 1077 WP_003227975.1 MraY family glycosyltransferase -

Sequence

Protein


Download         Length: 229 a.a.        Molecular weight: 25866.57 Da        Isoelectric Point: 5.9446

>NTDB_id=851236 QWI19_RS18155 WP_003219701.1 3491296..3491985(-) (degU) [Bacillus subtilis strain 6D1]
MTKVNIVIIDDHQLFREGVKRILDFEPTFEVVAEGDDGDEAARIVEHYHPDVVIMDINMPNVNGVEATKQLVELYPESKV
IILSIHDDENYVTHALKTGARGYLLKEMDADTLIEAVKVVAEGGSYLHPKVTHNLVNEFRRLATSGVSAHPQHEVYPEIR
RPLHILTRRECEVLQMLADGKSNRGIGESLFISEKTVKNHVSNILQKMNVNDRTQAVVVAIKNGWVEMR

Nucleotide


Download         Length: 690 bp        

>NTDB_id=851236 QWI19_RS18155 WP_003219701.1 3491296..3491985(-) (degU) [Bacillus subtilis strain 6D1]
GTGACTAAAGTAAACATTGTTATTATCGACGACCATCAGTTATTTCGTGAAGGTGTTAAACGGATATTGGATTTTGAACC
TACCTTTGAAGTGGTAGCCGAAGGTGATGACGGAGACGAAGCGGCTCGTATTGTTGAGCACTATCATCCTGATGTTGTGA
TCATGGATATCAATATGCCAAACGTAAATGGTGTGGAAGCTACAAAACAGCTTGTAGAGCTGTATCCTGAATCTAAAGTA
ATTATTCTATCAATTCACGATGACGAAAATTATGTAACACATGCCCTGAAAACAGGTGCAAGAGGTTATCTGCTGAAAGA
GATGGATGCTGATACATTAATTGAAGCGGTTAAAGTAGTGGCTGAGGGCGGATCTTACCTCCATCCGAAGGTTACTCACA
ACCTCGTTAACGAATTCCGCCGCCTTGCAACAAGCGGAGTTTCTGCACACCCTCAACATGAGGTTTACCCTGAAATCCGC
AGACCATTACATATTTTAACTAGGCGGGAATGTGAAGTGCTGCAGATGCTTGCAGACGGAAAAAGCAACCGCGGTATTGG
TGAATCATTGTTTATCAGTGAGAAAACCGTTAAAAACCATGTCAGCAATATTTTACAAAAAATGAATGTAAACGACCGGA
CGCAAGCCGTTGTGGTCGCCATTAAAAATGGCTGGGTAGAAATGAGATAG

Domains

Predicted by InterproScan.

Bacterial regulatory proteins, luxR family (GerE)

(165-220)

Response regulator receiver domain (Response_reg)

(6-118)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB G4P1D5

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  degU Bacillus subtilis subsp. subtilis str. 168

100

100

1